Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
LMX1BO60663 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
LMX1BO60663 OR11H4-201ENST00000315409 1082 ntBASIC3.52□□□□□ -1.85
LMX1BO60663 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
LMX1BO60663 RNU6-343P-201ENST00000364709 104 ntBASIC3.52□□□□□ -1.85
LMX1BO60663 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC3.52□□□□□ -1.85
LMX1BO60663 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC3.52□□□□□ -1.85
LMX1BO60663 BTF3P7-201ENST00000407097 488 ntBASIC3.52□□□□□ -1.85
LMX1BO60663 RNA5SP44-201ENST00000410446 133 ntBASIC3.52□□□□□ -1.85
LMX1BO60663 Y_RNA.598-201ENST00000410480 95 ntBASIC3.52□□□□□ -1.85
LMX1BO60663 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC3.52□□□□□ -1.85
LMX1BO60663 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC3.52□□□□□ -1.85
LMX1BO60663 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC3.52□□□□□ -1.85
LMX1BO60663 AL513174.1-201ENST00000423182 629 ntBASIC3.52□□□□□ -1.85
LMX1BO60663 ISCA1P1-201ENST00000426679 387 ntBASIC3.52□□□□□ -1.85
LMX1BO60663 RPS26P47-201ENST00000427219 348 ntBASIC3.52□□□□□ -1.85
LMX1BO60663 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC3.52□□□□□ -1.85
LMX1BO60663 RPL36P19-201ENST00000430744 301 ntBASIC3.52□□□□□ -1.85
LMX1BO60663 AC087650.1-201ENST00000431445 468 ntBASIC3.52□□□□□ -1.85
LMX1BO60663 AC023347.2-201ENST00000433994 462 ntBASIC3.52□□□□□ -1.85
LMX1BO60663 RSU1P2-202ENST00000437884 485 ntBASIC3.52□□□□□ -1.85
LMX1BO60663 MTND5P14-201ENST00000441481 1267 ntBASIC3.52□□□□□ -1.85
LMX1BO60663 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC3.52□□□□□ -1.85
LMX1BO60663 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
LMX1BO60663 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC3.52□□□□□ -1.85
LMX1BO60663 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC3.52□□□□□ -1.85
LMX1BO60663 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC3.52□□□□□ -1.85
LMX1BO60663 PDSS1P2-201ENST00000449397 678 ntBASIC3.52□□□□□ -1.85
LMX1BO60663 USP9YP12-201ENST00000450481 570 ntBASIC3.52□□□□□ -1.85
LMX1BO60663 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC3.52□□□□□ -1.85
LMX1BO60663 AC146507.1-201ENST00000468335 354 ntBASIC3.52□□□□□ -1.85
LMX1BO60663 RPL31P50-201ENST00000471002 296 ntBASIC3.52□□□□□ -1.85
LMX1BO60663 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC3.52□□□□□ -1.85
LMX1BO60663 POU5F1P7-201ENST00000508759 541 ntBASIC3.52□□□□□ -1.85
LMX1BO60663 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
LMX1BO60663 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC3.52□□□□□ -1.85
LMX1BO60663 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
LMX1BO60663 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC3.52□□□□□ -1.85
LMX1BO60663 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC3.52□□□□□ -1.85
LMX1BO60663 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC3.52□□□□□ -1.85
LMX1BO60663 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
LMX1BO60663 DEFB108A-201ENST00000530110 222 ntBASIC3.52□□□□□ -1.85
LMX1BO60663 AC022878.1-201ENST00000530684 149 ntBASIC3.52□□□□□ -1.85
LMX1BO60663 AP003122.4-201ENST00000530980 758 ntBASIC3.52□□□□□ -1.85
LMX1BO60663 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC3.52□□□□□ -1.85
LMX1BO60663 ZNF519P2-201ENST00000557032 169 ntBASIC3.52□□□□□ -1.85
LMX1BO60663 HSPE1P3-201ENST00000559254 309 ntBASIC3.52□□□□□ -1.85
LMX1BO60663 AC068135.2-201ENST00000569293 1028 ntBASIC3.52□□□□□ -1.85
LMX1BO60663 AC009977.1-201ENST00000586015 570 ntBASIC3.52□□□□□ -1.85
LMX1BO60663 BNIP3P23-201ENST00000599655 511 ntBASIC3.52□□□□□ -1.85
LMX1BO60663 AL606490.9-201ENST00000603331 271 ntBASIC3.52□□□□□ -1.85
LMX1BO60663 PRELID3BP8-201ENST00000604148 295 ntBASIC3.52□□□□□ -1.85
LMX1BO60663 AC112191.3-201ENST00000604371 277 ntBASIC3.52□□□□□ -1.85
LMX1BO60663 HSPE1P14-201ENST00000605812 302 ntBASIC3.52□□□□□ -1.85
LMX1BO60663 AC128687.2-201ENST00000609657 566 ntBASIC3.52□□□□□ -1.85
LMX1BO60663 AC078899.5-201ENST00000612475 178 ntBASIC3.52□□□□□ -1.85
LMX1BO60663 AC007014.2-201ENST00000615581 479 ntBASIC3.52□□□□□ -1.85
LMX1BO60663 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC3.52□□□□□ -1.85
LMX1BO60663 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC3.52□□□□□ -1.85
LMX1BO60663 AL356321.1-201ENST00000621360 228 ntBASIC3.52□□□□□ -1.85
LMX1BO60663 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
LMX1BO60663 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
LMX1BO60663 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC3.52□□□□□ -1.85
LMX1BO60663 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
LMX1BO60663 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
LMX1BO60663 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC3.52□□□□□ -1.85
LMX1BO60663 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
LMX1BO60663 AP002907.1-201ENST00000606361 1430 ntBASIC3.52□□□□□ -1.85
LMX1BO60663 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
LMX1BO60663 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
LMX1BO60663 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
LMX1BO60663 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3.52□□□□□ -1.85
LMX1BO60663 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC3.51□□□□□ -1.85
LMX1BO60663 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC3.51□□□□□ -1.85
LMX1BO60663 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.51□□□□□ -1.85
LMX1BO60663 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
LMX1BO60663 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC3.51□□□□□ -1.85
LMX1BO60663 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
LMX1BO60663 Y_RNA.256-201ENST00000364594 104 ntBASIC3.51□□□□□ -1.85
LMX1BO60663 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
LMX1BO60663 RNU5A-6P-201ENST00000384136 116 ntBASIC3.51□□□□□ -1.85
LMX1BO60663 RNU6-441P-201ENST00000384545 106 ntBASIC3.51□□□□□ -1.85
LMX1BO60663 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
LMX1BO60663 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC3.51□□□□□ -1.85
LMX1BO60663 SNORA11.1-201ENST00000408133 129 ntBASIC3.51□□□□□ -1.85
LMX1BO60663 ERMN-204ENST00000409925 556 ntTSL 4 BASIC3.51□□□□□ -1.85
LMX1BO60663 RN7SKP266-201ENST00000410232 287 ntBASIC3.51□□□□□ -1.85
LMX1BO60663 RPS3AP3-201ENST00000411933 242 ntBASIC3.51□□□□□ -1.85
LMX1BO60663 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC3.51□□□□□ -1.85
LMX1BO60663 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC3.51□□□□□ -1.85
LMX1BO60663 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
LMX1BO60663 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC3.51□□□□□ -1.85
LMX1BO60663 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC3.51□□□□□ -1.85
LMX1BO60663 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC3.51□□□□□ -1.85
LMX1BO60663 RPL12P46-201ENST00000436610 195 ntBASIC3.51□□□□□ -1.85
LMX1BO60663 RPS4XP4-201ENST00000443195 763 ntBASIC3.51□□□□□ -1.85
LMX1BO60663 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC3.51□□□□□ -1.85
LMX1BO60663 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
LMX1BO60663 HMGN3P1-201ENST00000453847 193 ntBASIC3.51□□□□□ -1.85
LMX1BO60663 AC133473.1-201ENST00000455173 299 ntBASIC3.51□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 81.8 ms