Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 AC126177.5-201ENST00000549599 178 ntBASIC5.74□□□□□ -1.49
USP3Q9Y6I4 HMGN2P47-201ENST00000559378 272 ntBASIC5.74□□□□□ -1.49
USP3Q9Y6I4 FKBP1AP1-201ENST00000594588 318 ntBASIC5.74□□□□□ -1.49
USP3Q9Y6I4 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC5.74□□□□□ -1.49
USP3Q9Y6I4 AL360012.1-201ENST00000602813 131 ntBASIC5.74□□□□□ -1.49
USP3Q9Y6I4 AL512329.2-201ENST00000607350 548 ntBASIC5.74□□□□□ -1.49
USP3Q9Y6I4 EIF3FP1-201ENST00000613970 806 ntBASIC5.74□□□□□ -1.49
USP3Q9Y6I4 AL355810.1-201ENST00000614629 552 ntBASIC5.74□□□□□ -1.49
USP3Q9Y6I4 AC015967.1-201ENST00000619893 476 ntBASIC5.74□□□□□ -1.49
USP3Q9Y6I4 AL589994.2-201ENST00000621124 579 ntBASIC5.74□□□□□ -1.49
USP3Q9Y6I4 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC5.74□□□□□ -1.49
USP3Q9Y6I4 EEF1A1P36-201ENST00000427807 1351 ntBASIC5.74□□□□□ -1.49
USP3Q9Y6I4 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
USP3Q9Y6I4 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC5.74□□□□□ -1.49
USP3Q9Y6I4 AC007938.2-201ENST00000604666 2634 ntBASIC5.74□□□□□ -1.49
USP3Q9Y6I4 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC5.74□□□□□ -1.49
USP3Q9Y6I4 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
USP3Q9Y6I4 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC5.73□□□□□ -1.49
USP3Q9Y6I4 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
USP3Q9Y6I4 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
USP3Q9Y6I4 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
USP3Q9Y6I4 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.73□□□□□ -1.49
USP3Q9Y6I4 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC5.73□□□□□ -1.49
USP3Q9Y6I4 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC5.73□□□□□ -1.49
USP3Q9Y6I4 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC5.73□□□□□ -1.49
USP3Q9Y6I4 AC144833.1-201ENST00000567953 4089 ntBASIC5.73□□□□□ -1.49
USP3Q9Y6I4 THRB-203ENST00000396671 7506 ntAPPRIS P2 TSL 5 BASIC5.73□□□□□ -1.49
USP3Q9Y6I4 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
USP3Q9Y6I4 MIR133B-201ENST00000362210 119 ntBASIC5.73□□□□□ -1.49
USP3Q9Y6I4 Y_RNA.106-201ENST00000363189 100 ntBASIC5.73□□□□□ -1.49
USP3Q9Y6I4 Y_RNA.117-201ENST00000363294 101 ntBASIC5.73□□□□□ -1.49
USP3Q9Y6I4 Y_RNA.210-201ENST00000364161 110 ntBASIC5.73□□□□□ -1.49
USP3Q9Y6I4 RNU6-715P-201ENST00000365204 103 ntBASIC5.73□□□□□ -1.49
USP3Q9Y6I4 SMIM11P1-201ENST00000369586 178 ntBASIC5.73□□□□□ -1.49
USP3Q9Y6I4 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC5.73□□□□□ -1.49
USP3Q9Y6I4 UBE2V1P4-201ENST00000425374 344 ntBASIC5.73□□□□□ -1.49
USP3Q9Y6I4 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC5.73□□□□□ -1.49
USP3Q9Y6I4 AC093106.2-201ENST00000428212 385 ntBASIC5.73□□□□□ -1.49
USP3Q9Y6I4 USP9YP30-201ENST00000430729 455 ntBASIC5.73□□□□□ -1.49
USP3Q9Y6I4 NDUFB4P8-201ENST00000435351 367 ntBASIC5.73□□□□□ -1.49
USP3Q9Y6I4 AC008264.1-201ENST00000447612 367 ntBASIC5.73□□□□□ -1.49
USP3Q9Y6I4 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC5.73□□□□□ -1.49
USP3Q9Y6I4 FABP5P13-201ENST00000452144 328 ntBASIC5.73□□□□□ -1.49
USP3Q9Y6I4 AC008481.1-201ENST00000463278 396 ntBASIC5.73□□□□□ -1.49
USP3Q9Y6I4 RPL12P20-201ENST00000475538 479 ntBASIC5.73□□□□□ -1.49
USP3Q9Y6I4 AP001086.1-201ENST00000494882 321 ntBASIC5.73□□□□□ -1.49
USP3Q9Y6I4 LEF1-218ENST00000512172 598 ntTSL 2 BASIC5.73□□□□□ -1.49
USP3Q9Y6I4 AC016065.2-201ENST00000514530 444 ntBASIC5.73□□□□□ -1.49
USP3Q9Y6I4 SNORA40.14-201ENST00000516543 86 ntBASIC5.73□□□□□ -1.49
USP3Q9Y6I4 RNA5SP384-201ENST00000516615 116 ntBASIC5.73□□□□□ -1.49
USP3Q9Y6I4 AC103783.1-201ENST00000520506 373 ntBASIC5.73□□□□□ -1.49
USP3Q9Y6I4 AP005403.1-201ENST00000579720 229 ntBASIC5.73□□□□□ -1.49
USP3Q9Y6I4 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
USP3Q9Y6I4 IGLCOR22-2-201ENST00000605398 313 ntBASIC5.73□□□□□ -1.49
USP3Q9Y6I4 SNORD58B-201ENST00000607313 66 ntBASIC5.73□□□□□ -1.49
USP3Q9Y6I4 MIR6133-201ENST00000617057 108 ntBASIC5.73□□□□□ -1.49
USP3Q9Y6I4 MIR6837-201ENST00000620884 64 ntBASIC5.73□□□□□ -1.49
USP3Q9Y6I4 AC074140.1-201ENST00000621617 208 ntBASIC5.73□□□□□ -1.49
USP3Q9Y6I4 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
USP3Q9Y6I4 DDX10P1-201ENST00000448545 1933 ntBASIC5.73□□□□□ -1.49
USP3Q9Y6I4 AL137141.1-201ENST00000624622 4836 ntBASIC5.73□□□□□ -1.49
USP3Q9Y6I4 AC015799.1-201ENST00000622996 3122 ntBASIC5.73□□□□□ -1.49
USP3Q9Y6I4 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
USP3Q9Y6I4 HSP90AA5P-201ENST00000438353 2192 ntBASIC5.73□□□□□ -1.49
USP3Q9Y6I4 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
USP3Q9Y6I4 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC5.73□□□□□ -1.49
USP3Q9Y6I4 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
USP3Q9Y6I4 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
USP3Q9Y6I4 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC5.72□□□□□ -1.49
USP3Q9Y6I4 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
USP3Q9Y6I4 RN7SKP145-201ENST00000363291 303 ntBASIC5.72□□□□□ -1.49
USP3Q9Y6I4 SNORD14.1-201ENST00000365609 90 ntBASIC5.72□□□□□ -1.49
USP3Q9Y6I4 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
USP3Q9Y6I4 MIR1302-6-201ENST00000408466 90 ntBASIC5.72□□□□□ -1.49
USP3Q9Y6I4 RNA5SP111-201ENST00000411386 101 ntBASIC5.72□□□□□ -1.49
USP3Q9Y6I4 AMMECR1LP1-201ENST00000415152 841 ntBASIC5.72□□□□□ -1.49
USP3Q9Y6I4 UBE2FP1-201ENST00000416536 447 ntBASIC5.72□□□□□ -1.49
USP3Q9Y6I4 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC5.72□□□□□ -1.49
USP3Q9Y6I4 AL161722.2-201ENST00000434731 981 ntBASIC5.72□□□□□ -1.49
USP3Q9Y6I4 RHOT1P3-201ENST00000436571 331 ntBASIC5.72□□□□□ -1.49
USP3Q9Y6I4 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC5.72□□□□□ -1.49
USP3Q9Y6I4 DYNLT3P2-201ENST00000442517 295 ntBASIC5.72□□□□□ -1.49
USP3Q9Y6I4 NDUFAF4P3-201ENST00000456468 525 ntBASIC5.72□□□□□ -1.49
USP3Q9Y6I4 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC5.72□□□□□ -1.49
USP3Q9Y6I4 RNU6-1132P-201ENST00000459214 107 ntBASIC5.72□□□□□ -1.49
USP3Q9Y6I4 COPS8P2-201ENST00000473228 627 ntBASIC5.72□□□□□ -1.49
USP3Q9Y6I4 AC093852.1-201ENST00000503587 266 ntBASIC5.72□□□□□ -1.49
USP3Q9Y6I4 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC5.72□□□□□ -1.49
USP3Q9Y6I4 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC5.72□□□□□ -1.49
USP3Q9Y6I4 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC5.72□□□□□ -1.49
USP3Q9Y6I4 AC091912.1-201ENST00000511351 248 ntBASIC5.72□□□□□ -1.49
USP3Q9Y6I4 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC5.72□□□□□ -1.49
USP3Q9Y6I4 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC5.72□□□□□ -1.49
USP3Q9Y6I4 OR5D17P-201ENST00000531492 978 ntBASIC5.72□□□□□ -1.49
USP3Q9Y6I4 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC5.72□□□□□ -1.49
USP3Q9Y6I4 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC5.72□□□□□ -1.49
USP3Q9Y6I4 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC5.72□□□□□ -1.49
USP3Q9Y6I4 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC5.72□□□□□ -1.49
USP3Q9Y6I4 AL139124.1-201ENST00000609123 421 ntBASIC5.72□□□□□ -1.49
USP3Q9Y6I4 AC098479.1-201ENST00000609225 154 ntBASIC5.72□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms