Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 RPL36AP51-201ENST00000487216 318 ntBASIC2.16□□□□□ -2.06
SCN3AQ9NY46 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC2.16□□□□□ -2.06
SCN3AQ9NY46 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC2.16□□□□□ -2.06
SCN3AQ9NY46 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC2.16□□□□□ -2.06
SCN3AQ9NY46 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC2.16□□□□□ -2.06
SCN3AQ9NY46 AC016877.3-201ENST00000606778 504 ntBASIC2.16□□□□□ -2.06
SCN3AQ9NY46 AL359198.2-201ENST00000611836 194 ntBASIC2.16□□□□□ -2.06
SCN3AQ9NY46 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.16□□□□□ -2.06
SCN3AQ9NY46 AC022031.1-201ENST00000585985 2593 ntBASIC2.16□□□□□ -2.06
SCN3AQ9NY46 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC2.16□□□□□ -2.06
SCN3AQ9NY46 ZNF33BP1-201ENST00000452497 1834 ntBASIC2.16□□□□□ -2.06
SCN3AQ9NY46 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
SCN3AQ9NY46 MIR607-201ENST00000385241 96 ntBASIC2.15□□□□□ -2.06
SCN3AQ9NY46 MIR591-201ENST00000385290 95 ntBASIC2.15□□□□□ -2.06
SCN3AQ9NY46 RAP1BP1-201ENST00000412709 553 ntBASIC2.15□□□□□ -2.06
SCN3AQ9NY46 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC2.15□□□□□ -2.06
SCN3AQ9NY46 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC2.15□□□□□ -2.06
SCN3AQ9NY46 Z77249.1-201ENST00000444622 1175 ntBASIC2.15□□□□□ -2.06
SCN3AQ9NY46 AL353705.4-201ENST00000449661 238 ntBASIC2.15□□□□□ -2.06
SCN3AQ9NY46 AL513343.1-201ENST00000451818 792 ntBASIC2.15□□□□□ -2.06
SCN3AQ9NY46 AC104308.1-201ENST00000454621 333 ntBASIC2.15□□□□□ -2.06
SCN3AQ9NY46 AC104687.1-201ENST00000485829 412 ntBASIC2.15□□□□□ -2.06
SCN3AQ9NY46 AL024509.2-201ENST00000493462 493 ntBASIC2.15□□□□□ -2.06
SCN3AQ9NY46 RNU4-18P-201ENST00000516751 149 ntBASIC2.15□□□□□ -2.06
SCN3AQ9NY46 RN7SKP96-201ENST00000516948 297 ntBASIC2.15□□□□□ -2.06
SCN3AQ9NY46 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC2.15□□□□□ -2.06
SCN3AQ9NY46 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC2.15□□□□□ -2.06
SCN3AQ9NY46 AC011978.2-201ENST00000569835 2054 ntBASIC2.15□□□□□ -2.07
SCN3AQ9NY46 RNU6-618P-201ENST00000363518 112 ntBASIC2.15□□□□□ -2.07
SCN3AQ9NY46 AL591416.1-201ENST00000404015 867 ntBASIC2.15□□□□□ -2.07
SCN3AQ9NY46 OR51AB1P-201ENST00000429046 620 ntBASIC2.15□□□□□ -2.07
SCN3AQ9NY46 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC2.15□□□□□ -2.07
SCN3AQ9NY46 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.15□□□□□ -2.07
SCN3AQ9NY46 AC109635.4-202ENST00000531666 412 ntBASIC2.15□□□□□ -2.07
SCN3AQ9NY46 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC2.15□□□□□ -2.07
SCN3AQ9NY46 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC2.15□□□□□ -2.07
SCN3AQ9NY46 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
SCN3AQ9NY46 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC2.15□□□□□ -2.07
SCN3AQ9NY46 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC2.14□□□□□ -2.07
SCN3AQ9NY46 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC2.14□□□□□ -2.07
SCN3AQ9NY46 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.14□□□□□ -2.07
SCN3AQ9NY46 U8.2-201ENST00000363156 134 ntBASIC2.14□□□□□ -2.07
SCN3AQ9NY46 HMGN2P20-201ENST00000437531 273 ntBASIC2.14□□□□□ -2.07
SCN3AQ9NY46 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC2.14□□□□□ -2.07
SCN3AQ9NY46 HMGB1P12-201ENST00000438594 598 ntBASIC2.14□□□□□ -2.07
SCN3AQ9NY46 RPL21P2-201ENST00000440049 481 ntBASIC2.14□□□□□ -2.07
SCN3AQ9NY46 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC2.14□□□□□ -2.07
SCN3AQ9NY46 FAM103A2P-201ENST00000444122 354 ntBASIC2.14□□□□□ -2.07
SCN3AQ9NY46 AC099677.4-201ENST00000446786 380 ntTSL 3 BASIC2.14□□□□□ -2.07
SCN3AQ9NY46 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC2.14□□□□□ -2.07
SCN3AQ9NY46 MTND5P4-201ENST00000514978 288 ntBASIC2.14□□□□□ -2.07
SCN3AQ9NY46 AP000867.2-201ENST00000532468 320 ntBASIC2.14□□□□□ -2.07
SCN3AQ9NY46 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC2.14□□□□□ -2.07
SCN3AQ9NY46 MIR4435-1-201ENST00000582552 80 ntBASIC2.14□□□□□ -2.07
SCN3AQ9NY46 AC068313.1-201ENST00000604028 1008 ntBASIC2.14□□□□□ -2.07
SCN3AQ9NY46 AC136601.2-201ENST00000604356 474 ntBASIC2.14□□□□□ -2.07
SCN3AQ9NY46 AL358975.1-202ENST00000628133 589 ntTSL 5 BASIC2.14□□□□□ -2.07
SCN3AQ9NY46 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC2.14□□□□□ -2.07
SCN3AQ9NY46 AL354719.1-201ENST00000406535 843 ntBASIC2.13□□□□□ -2.07
SCN3AQ9NY46 RN7SKP192-201ENST00000411291 327 ntBASIC2.13□□□□□ -2.07
SCN3AQ9NY46 HMGN2P35-201ENST00000412164 270 ntBASIC2.13□□□□□ -2.07
SCN3AQ9NY46 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC2.13□□□□□ -2.07
SCN3AQ9NY46 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC2.13□□□□□ -2.07
SCN3AQ9NY46 TOMM20P4-201ENST00000427861 435 ntBASIC2.13□□□□□ -2.07
SCN3AQ9NY46 AL356320.1-201ENST00000429616 163 ntBASIC2.13□□□□□ -2.07
SCN3AQ9NY46 AC109583.1-201ENST00000432156 268 ntBASIC2.13□□□□□ -2.07
SCN3AQ9NY46 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC2.13□□□□□ -2.07
SCN3AQ9NY46 AC093392.2-201ENST00000450682 337 ntBASIC2.13□□□□□ -2.07
SCN3AQ9NY46 HMGN1P8-201ENST00000463578 288 ntBASIC2.13□□□□□ -2.07
SCN3AQ9NY46 KATNBL1P4-201ENST00000503545 918 ntBASIC2.13□□□□□ -2.07
SCN3AQ9NY46 AC098799.2-201ENST00000509466 868 ntBASIC2.13□□□□□ -2.07
SCN3AQ9NY46 AC006445.2-201ENST00000510061 472 ntBASIC2.13□□□□□ -2.07
SCN3AQ9NY46 TBCAP3-201ENST00000512475 312 ntBASIC2.13□□□□□ -2.07
SCN3AQ9NY46 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC2.13□□□□□ -2.07
SCN3AQ9NY46 MTCYBP20-201ENST00000524239 1129 ntBASIC2.13□□□□□ -2.07
SCN3AQ9NY46 AC078814.3-201ENST00000553036 491 ntBASIC2.13□□□□□ -2.07
SCN3AQ9NY46 AC012182.1-201ENST00000570133 895 ntBASIC2.13□□□□□ -2.07
SCN3AQ9NY46 RPL12P50-201ENST00000603116 116 ntBASIC2.13□□□□□ -2.07
SCN3AQ9NY46 HDX-206ENST00000506585 6158 ntTSL 2 BASIC2.13□□□□□ -2.07
SCN3AQ9NY46 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC2.13□□□□□ -2.07
SCN3AQ9NY46 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
SCN3AQ9NY46 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC2.13□□□□□ -2.07
SCN3AQ9NY46 AC003685.2-201ENST00000422795 395 ntBASIC2.13□□□□□ -2.07
SCN3AQ9NY46 OOSP1P1-201ENST00000423265 274 ntBASIC2.13□□□□□ -2.07
SCN3AQ9NY46 AL035407.1-201ENST00000429211 571 ntBASIC2.13□□□□□ -2.07
SCN3AQ9NY46 C1DP3-201ENST00000455013 423 ntBASIC2.13□□□□□ -2.07
SCN3AQ9NY46 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
SCN3AQ9NY46 AC021146.7-201ENST00000509604 775 ntBASIC2.13□□□□□ -2.07
SCN3AQ9NY46 C1GALT1P2-201ENST00000510813 1104 ntBASIC2.13□□□□□ -2.07
SCN3AQ9NY46 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC2.13□□□□□ -2.07
SCN3AQ9NY46 AC012409.1-202ENST00000558449 639 ntTSL 2 BASIC2.13□□□□□ -2.07
SCN3AQ9NY46 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC2.13□□□□□ -2.07
SCN3AQ9NY46 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC2.13□□□□□ -2.07
SCN3AQ9NY46 MIR4648-201ENST00000580107 72 ntBASIC2.13□□□□□ -2.07
SCN3AQ9NY46 AL392112.1-201ENST00000605115 829 ntBASIC2.13□□□□□ -2.07
SCN3AQ9NY46 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.13□□□□□ -2.07
SCN3AQ9NY46 AC139769.3-201ENST00000618383 175 ntBASIC2.13□□□□□ -2.07
SCN3AQ9NY46 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC2.13□□□□□ -2.07
SCN3AQ9NY46 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.13□□□□□ -2.07
SCN3AQ9NY46 MTND5P6-201ENST00000422338 1798 ntBASIC2.13□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms