Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC091564.1-201ENST00000464563 479 ntBASIC3.31□□□□□ -1.88
NKX3-1Q99801 RPS4XP10-201ENST00000465034 731 ntBASIC3.31□□□□□ -1.88
NKX3-1Q99801 AL024509.2-201ENST00000493462 493 ntBASIC3.31□□□□□ -1.88
NKX3-1Q99801 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC3.31□□□□□ -1.88
NKX3-1Q99801 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC3.31□□□□□ -1.88
NKX3-1Q99801 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC3.31□□□□□ -1.88
NKX3-1Q99801 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC3.31□□□□□ -1.88
NKX3-1Q99801 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC3.31□□□□□ -1.88
NKX3-1Q99801 AC034159.1-201ENST00000513885 583 ntBASIC3.31□□□□□ -1.88
NKX3-1Q99801 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC3.31□□□□□ -1.88
NKX3-1Q99801 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC3.31□□□□□ -1.88
NKX3-1Q99801 NDUFA5P2-201ENST00000519723 344 ntBASIC3.31□□□□□ -1.88
NKX3-1Q99801 AC060788.1-201ENST00000521318 469 ntBASIC3.31□□□□□ -1.88
NKX3-1Q99801 AC022695.1-201ENST00000522089 237 ntBASIC3.31□□□□□ -1.88
NKX3-1Q99801 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC3.31□□□□□ -1.88
NKX3-1Q99801 AP003385.6-201ENST00000531603 374 ntBASIC3.31□□□□□ -1.88
NKX3-1Q99801 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
NKX3-1Q99801 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC3.31□□□□□ -1.88
NKX3-1Q99801 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC3.31□□□□□ -1.88
NKX3-1Q99801 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC3.31□□□□□ -1.88
NKX3-1Q99801 YPEL5P3-201ENST00000547227 352 ntBASIC3.31□□□□□ -1.88
NKX3-1Q99801 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC3.31□□□□□ -1.88
NKX3-1Q99801 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC3.31□□□□□ -1.88
NKX3-1Q99801 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC3.31□□□□□ -1.88
NKX3-1Q99801 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC3.31□□□□□ -1.88
NKX3-1Q99801 AC006270.2-201ENST00000578523 652 ntBASIC3.31□□□□□ -1.88
NKX3-1Q99801 MIR4286-201ENST00000580651 93 ntBASIC3.31□□□□□ -1.88
NKX3-1Q99801 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC3.31□□□□□ -1.88
NKX3-1Q99801 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC3.31□□□□□ -1.88
NKX3-1Q99801 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC3.31□□□□□ -1.88
NKX3-1Q99801 DUXAP11-201ENST00000603858 526 ntBASIC3.31□□□□□ -1.88
NKX3-1Q99801 AC105129.3-201ENST00000605455 485 ntBASIC3.31□□□□□ -1.88
NKX3-1Q99801 AL391497.1-201ENST00000608671 547 ntBASIC3.31□□□□□ -1.88
NKX3-1Q99801 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC3.31□□□□□ -1.88
NKX3-1Q99801 AL357080.1-201ENST00000617394 239 ntBASIC3.31□□□□□ -1.88
NKX3-1Q99801 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC3.31□□□□□ -1.88
NKX3-1Q99801 AC026422.1-201ENST00000623961 452 ntBASIC3.31□□□□□ -1.88
NKX3-1Q99801 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
NKX3-1Q99801 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
NKX3-1Q99801 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
NKX3-1Q99801 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
NKX3-1Q99801 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC3.3□□□□□ -1.88
NKX3-1Q99801 AC097714.1-201ENST00000511272 1647 ntBASIC3.3□□□□□ -1.88
NKX3-1Q99801 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.3□□□□□ -1.88
NKX3-1Q99801 AC093908.1-201ENST00000623125 8092 ntBASIC3.3□□□□□ -1.88
NKX3-1Q99801 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
NKX3-1Q99801 MFSD8-236ENST00000641509 4050 ntBASIC3.3□□□□□ -1.88
NKX3-1Q99801 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
NKX3-1Q99801 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
NKX3-1Q99801 RNU6-28P-201ENST00000362378 107 ntBASIC3.3□□□□□ -1.88
NKX3-1Q99801 ACEA_U3.1-201ENST00000363057 217 ntBASIC3.3□□□□□ -1.88
NKX3-1Q99801 MT-TH-201ENST00000387441 69 ntBASIC3.3□□□□□ -1.88
NKX3-1Q99801 SNORA26.8-201ENST00000391306 124 ntBASIC3.3□□□□□ -1.88
NKX3-1Q99801 HLFP1-201ENST00000402375 499 ntBASIC3.3□□□□□ -1.88
NKX3-1Q99801 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC3.3□□□□□ -1.88
NKX3-1Q99801 AL356095.1-201ENST00000417217 199 ntBASIC3.3□□□□□ -1.88
NKX3-1Q99801 RPL21P109-201ENST00000422213 475 ntBASIC3.3□□□□□ -1.88
NKX3-1Q99801 AL365338.1-201ENST00000422282 858 ntBASIC3.3□□□□□ -1.88
NKX3-1Q99801 AC006548.1-201ENST00000427470 102 ntBASIC3.3□□□□□ -1.88
NKX3-1Q99801 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC3.3□□□□□ -1.88
NKX3-1Q99801 SNRPEP7-201ENST00000438350 220 ntBASIC3.3□□□□□ -1.88
NKX3-1Q99801 SNORA71B-202ENST00000439232 272 ntBASIC3.3□□□□□ -1.88
NKX3-1Q99801 AL512286.1-201ENST00000439244 400 ntBASIC3.3□□□□□ -1.88
NKX3-1Q99801 AL353691.1-201ENST00000451332 387 ntBASIC3.3□□□□□ -1.88
NKX3-1Q99801 RNU7-170P-201ENST00000459303 61 ntBASIC3.3□□□□□ -1.88
NKX3-1Q99801 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC3.3□□□□□ -1.88
NKX3-1Q99801 AC084198.1-201ENST00000477747 402 ntBASIC3.3□□□□□ -1.88
NKX3-1Q99801 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC3.3□□□□□ -1.88
NKX3-1Q99801 NIPA2P2-201ENST00000496376 1083 ntBASIC3.3□□□□□ -1.88
NKX3-1Q99801 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC3.3□□□□□ -1.88
NKX3-1Q99801 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC3.3□□□□□ -1.88
NKX3-1Q99801 AC093809.1-201ENST00000509155 340 ntBASIC3.3□□□□□ -1.88
NKX3-1Q99801 NDUFB4P9-201ENST00000511646 388 ntBASIC3.3□□□□□ -1.88
NKX3-1Q99801 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC3.3□□□□□ -1.88
NKX3-1Q99801 RN7SKP83-201ENST00000516512 178 ntBASIC3.3□□□□□ -1.88
NKX3-1Q99801 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC3.3□□□□□ -1.88
NKX3-1Q99801 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
NKX3-1Q99801 AC013828.2-201ENST00000532487 235 ntBASIC3.3□□□□□ -1.88
NKX3-1Q99801 OR6C73P-201ENST00000546432 358 ntBASIC3.3□□□□□ -1.88
NKX3-1Q99801 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC3.3□□□□□ -1.88
NKX3-1Q99801 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
NKX3-1Q99801 AL121576.1-201ENST00000556055 276 ntBASIC3.3□□□□□ -1.88
NKX3-1Q99801 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC3.3□□□□□ -1.88
NKX3-1Q99801 AC106785.1-201ENST00000565935 262 ntBASIC3.3□□□□□ -1.88
NKX3-1Q99801 AC120057.2-201ENST00000571520 271 ntBASIC3.3□□□□□ -1.88
NKX3-1Q99801 MIR5186-201ENST00000577504 120 ntBASIC3.3□□□□□ -1.88
NKX3-1Q99801 MIR544B-201ENST00000582372 78 ntBASIC3.3□□□□□ -1.88
NKX3-1Q99801 PIGPP4-201ENST00000584447 307 ntBASIC3.3□□□□□ -1.88
NKX3-1Q99801 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC3.3□□□□□ -1.88
NKX3-1Q99801 BNIP3P23-201ENST00000599655 511 ntBASIC3.3□□□□□ -1.88
NKX3-1Q99801 AC012669.1-201ENST00000603209 283 ntBASIC3.3□□□□□ -1.88
NKX3-1Q99801 AL606490.9-201ENST00000603331 271 ntBASIC3.3□□□□□ -1.88
NKX3-1Q99801 AC090186.1-201ENST00000605991 572 ntBASIC3.3□□□□□ -1.88
NKX3-1Q99801 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC3.3□□□□□ -1.88
NKX3-1Q99801 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
NKX3-1Q99801 AC008443.7-201ENST00000622195 246 ntBASIC3.3□□□□□ -1.88
NKX3-1Q99801 CR381572.1-201ENST00000625098 102 ntBASIC3.3□□□□□ -1.88
NKX3-1Q99801 RNA5SP196-201ENST00000625967 102 ntBASIC3.3□□□□□ -1.88
NKX3-1Q99801 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
NKX3-1Q99801 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 121.7 ms