Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC106707.2-201ENST00000484182 374 ntBASIC3.34□□□□□ -1.87
VPS39Q96JC1 AC026414.1-201ENST00000504046 698 ntBASIC3.34□□□□□ -1.87
VPS39Q96JC1 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.34□□□□□ -1.87
VPS39Q96JC1 AC008837.1-201ENST00000511513 412 ntBASIC3.34□□□□□ -1.87
VPS39Q96JC1 APOOP4-201ENST00000513530 597 ntBASIC3.34□□□□□ -1.87
VPS39Q96JC1 PANCR-202ENST00000513690 448 ntTSL 2 BASIC3.34□□□□□ -1.87
VPS39Q96JC1 NDUFS5P6-201ENST00000529136 295 ntBASIC3.34□□□□□ -1.87
VPS39Q96JC1 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
VPS39Q96JC1 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC3.34□□□□□ -1.87
VPS39Q96JC1 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC3.34□□□□□ -1.87
VPS39Q96JC1 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC3.34□□□□□ -1.87
VPS39Q96JC1 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC3.34□□□□□ -1.87
VPS39Q96JC1 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.34□□□□□ -1.87
VPS39Q96JC1 AL445435.1-201ENST00000604232 665 ntBASIC3.34□□□□□ -1.87
VPS39Q96JC1 AC091946.2-201ENST00000606105 291 ntBASIC3.34□□□□□ -1.87
VPS39Q96JC1 AC093673.2-201ENST00000609674 331 ntBASIC3.34□□□□□ -1.87
VPS39Q96JC1 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.34□□□□□ -1.87
VPS39Q96JC1 AL161637.1-201ENST00000622380 412 ntBASIC3.34□□□□□ -1.87
VPS39Q96JC1 AC073476.4-201ENST00000628409 72 ntBASIC3.34□□□□□ -1.87
VPS39Q96JC1 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.34□□□□□ -1.87
VPS39Q96JC1 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC3.34□□□□□ -1.87
VPS39Q96JC1 AC009093.8-201ENST00000641769 292 ntBASIC3.34□□□□□ -1.87
VPS39Q96JC1 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.34□□□□□ -1.87
VPS39Q96JC1 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.34□□□□□ -1.88
VPS39Q96JC1 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.34□□□□□ -1.88
VPS39Q96JC1 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.34□□□□□ -1.88
VPS39Q96JC1 CR383658.2-201ENST00000547576 1525 ntBASIC3.34□□□□□ -1.88
VPS39Q96JC1 AL356274.2-201ENST00000624379 3752 ntBASIC3.33□□□□□ -1.88
VPS39Q96JC1 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.33□□□□□ -1.88
VPS39Q96JC1 SRP72P2-201ENST00000344851 1979 ntBASIC3.33□□□□□ -1.88
VPS39Q96JC1 TAS2R10-201ENST00000240619 1042 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
VPS39Q96JC1 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
VPS39Q96JC1 RNU4-35P-201ENST00000362588 141 ntBASIC3.33□□□□□ -1.88
VPS39Q96JC1 RNA5SP383-201ENST00000362934 120 ntBASIC3.33□□□□□ -1.88
VPS39Q96JC1 RNU6-799P-201ENST00000363567 107 ntBASIC3.33□□□□□ -1.88
VPS39Q96JC1 SNORA62.3-201ENST00000365110 153 ntBASIC3.33□□□□□ -1.88
VPS39Q96JC1 RNU6-657P-201ENST00000383904 107 ntBASIC3.33□□□□□ -1.88
VPS39Q96JC1 PTMAP2-201ENST00000397627 327 ntBASIC3.33□□□□□ -1.88
VPS39Q96JC1 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC3.33□□□□□ -1.88
VPS39Q96JC1 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC3.33□□□□□ -1.88
VPS39Q96JC1 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
VPS39Q96JC1 RPS7P9-201ENST00000414704 586 ntBASIC3.33□□□□□ -1.88
VPS39Q96JC1 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC3.33□□□□□ -1.88
VPS39Q96JC1 SYF2P2-201ENST00000417620 583 ntBASIC3.33□□□□□ -1.88
VPS39Q96JC1 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.33□□□□□ -1.88
VPS39Q96JC1 RPL27AP8-201ENST00000424277 446 ntBASIC3.33□□□□□ -1.88
VPS39Q96JC1 BX890604.2-201ENST00000427883 474 ntBASIC3.33□□□□□ -1.88
VPS39Q96JC1 AC073063.1-201ENST00000434352 607 ntBASIC3.33□□□□□ -1.88
VPS39Q96JC1 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.33□□□□□ -1.88
VPS39Q96JC1 PTGES3P1-201ENST00000439531 483 ntBASIC3.33□□□□□ -1.88
VPS39Q96JC1 AC092641.1-201ENST00000440229 772 ntBASIC3.33□□□□□ -1.88
VPS39Q96JC1 Z95327.1-201ENST00000446082 482 ntBASIC3.33□□□□□ -1.88
VPS39Q96JC1 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC3.33□□□□□ -1.88
VPS39Q96JC1 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.33□□□□□ -1.88
VPS39Q96JC1 MRPL42P4-201ENST00000453267 443 ntBASIC3.33□□□□□ -1.88
VPS39Q96JC1 AL359385.1-201ENST00000456509 365 ntBASIC3.33□□□□□ -1.88
VPS39Q96JC1 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.33□□□□□ -1.88
VPS39Q96JC1 SAP18P1-201ENST00000512058 390 ntBASIC3.33□□□□□ -1.88
VPS39Q96JC1 RNU6-276P-201ENST00000516114 96 ntBASIC3.33□□□□□ -1.88
VPS39Q96JC1 SNORA64.4-201ENST00000516632 81 ntBASIC3.33□□□□□ -1.88
VPS39Q96JC1 AC091163.3-201ENST00000518269 1144 ntBASIC3.33□□□□□ -1.88
VPS39Q96JC1 AC026403.1-201ENST00000518938 295 ntBASIC3.33□□□□□ -1.88
VPS39Q96JC1 AC027309.2-201ENST00000520566 192 ntBASIC3.33□□□□□ -1.88
VPS39Q96JC1 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC3.33□□□□□ -1.88
VPS39Q96JC1 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC3.33□□□□□ -1.88
VPS39Q96JC1 MTCO3P15-201ENST00000526563 574 ntBASIC3.33□□□□□ -1.88
VPS39Q96JC1 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.33□□□□□ -1.88
VPS39Q96JC1 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.33□□□□□ -1.88
VPS39Q96JC1 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC3.33□□□□□ -1.88
VPS39Q96JC1 OR4H12P-201ENST00000556269 907 ntBASIC3.33□□□□□ -1.88
VPS39Q96JC1 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC3.33□□□□□ -1.88
VPS39Q96JC1 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC3.33□□□□□ -1.88
VPS39Q96JC1 AC055876.1-202ENST00000567053 138 ntBASIC3.33□□□□□ -1.88
VPS39Q96JC1 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC3.33□□□□□ -1.88
VPS39Q96JC1 AC034105.4-201ENST00000568304 277 ntBASIC3.33□□□□□ -1.88
VPS39Q96JC1 AL031985.2-201ENST00000600955 480 ntBASIC3.33□□□□□ -1.88
VPS39Q96JC1 AC024933.1-201ENST00000608472 348 ntBASIC3.33□□□□□ -1.88
VPS39Q96JC1 AP002826.1-201ENST00000608835 315 ntBASIC3.33□□□□□ -1.88
VPS39Q96JC1 AL034408.1-202ENST00000636088 415 ntBASIC3.33□□□□□ -1.88
VPS39Q96JC1 AC013437.2-201ENST00000639587 677 ntBASIC3.33□□□□□ -1.88
VPS39Q96JC1 SUCLA2P2-201ENST00000417269 1309 ntBASIC3.33□□□□□ -1.88
VPS39Q96JC1 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
VPS39Q96JC1 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
VPS39Q96JC1 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
VPS39Q96JC1 FAM35CP-201ENST00000554755 2470 ntBASIC3.32□□□□□ -1.88
VPS39Q96JC1 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
VPS39Q96JC1 AC092435.3-201ENST00000565538 3654 ntBASIC3.32□□□□□ -1.88
VPS39Q96JC1 SNORD56.3-201ENST00000363507 71 ntBASIC3.32□□□□□ -1.88
VPS39Q96JC1 RNU6-1027P-201ENST00000383998 107 ntBASIC3.32□□□□□ -1.88
VPS39Q96JC1 MIR218-2-201ENST00000385006 110 ntBASIC3.32□□□□□ -1.88
VPS39Q96JC1 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC3.32□□□□□ -1.88
VPS39Q96JC1 BX842559.1-201ENST00000419615 532 ntBASIC3.32□□□□□ -1.88
VPS39Q96JC1 GTF2IP23-201ENST00000423746 351 ntBASIC3.32□□□□□ -1.88
VPS39Q96JC1 PSMA6P3-201ENST00000428242 164 ntBASIC3.32□□□□□ -1.88
VPS39Q96JC1 EZH2P1-201ENST00000431167 291 ntBASIC3.32□□□□□ -1.88
VPS39Q96JC1 CST9LP2-201ENST00000437612 320 ntBASIC3.32□□□□□ -1.88
VPS39Q96JC1 Z99127.3-201ENST00000448158 395 ntBASIC3.32□□□□□ -1.88
VPS39Q96JC1 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC3.32□□□□□ -1.88
VPS39Q96JC1 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC3.32□□□□□ -1.88
VPS39Q96JC1 AL031183.1-201ENST00000457667 207 ntBASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 129.2 ms