Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 AC005019.1-201ENST00000436455 431 ntBASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 OR10R1P-201ENST00000441524 1141 ntBASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 RAB9AP1-201ENST00000449393 573 ntBASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 TRBV26-201ENST00000456572 344 ntBASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 PRELID3BP5-201ENST00000508612 460 ntBASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 ARL2BPP5-201ENST00000523141 481 ntBASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 ZNF705CP-201ENST00000530515 889 ntBASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 GTF2IP22-201ENST00000554443 182 ntBASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 VN1R83P-201ENST00000595685 445 ntBASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 AC012669.1-201ENST00000603209 283 ntBASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 AC096947.1-201ENST00000603233 470 ntBASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 AL391834.2-201ENST00000609982 546 ntBASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 AC073968.1-201ENST00000618594 637 ntBASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 AC040168.1-201ENST00000623594 991 ntBASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 AL512506.2-201ENST00000624472 458 ntBASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 MTND4P9-201ENST00000507819 1346 ntBASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 TAS2R10-201ENST00000240619 1042 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 RNA5SP119-201ENST00000362715 117 ntBASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 RNU6-1066P-201ENST00000363573 105 ntBASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 RNA5SP50-201ENST00000363731 107 ntBASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 SNORD82-201ENST00000365530 70 ntBASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 CUBN-201ENST00000377823 705 ntTSL 3 BASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 TAF9BP1-201ENST00000396646 746 ntBASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 RNU6ATAC40P-201ENST00000408580 137 ntBASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 Y_RNA.625-201ENST00000411256 107 ntBASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 AC068533.2-201ENST00000411872 306 ntBASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 AC092447.6-201ENST00000414578 210 ntBASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 RPL7P10-201ENST00000417407 739 ntBASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 YPEL5P1-201ENST00000419731 367 ntBASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 AL354692.1-201ENST00000423044 315 ntBASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 RPS6P14-201ENST00000425165 719 ntBASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 HSFY7P-201ENST00000432672 318 ntBASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 AC091390.1-201ENST00000433904 331 ntBASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 HSFY8P-201ENST00000437934 318 ntBASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 MTCO1P53-201ENST00000441633 699 ntBASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 HMGB3P6-201ENST00000444896 598 ntBASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 HSFY5P-201ENST00000453726 309 ntBASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 AC017015.1-201ENST00000477387 286 ntBASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 VPS26AP1-201ENST00000483197 979 ntBASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 AC118282.1-201ENST00000506408 765 ntBASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 BNIP3P5-201ENST00000562290 498 ntBASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 MTND3P19-201ENST00000603825 345 ntBASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 AL513477.2-201ENST00000607858 568 ntBASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 AC104763.3-201ENST00000613765 618 ntBASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 AL355365.1-201ENST00000616480 294 ntBASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 CYCSP41-201ENST00000616920 296 ntBASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 AC022306.3-201ENST00000619930 550 ntBASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 AC084035.1-201ENST00000634543 607 ntBASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 AC090897.3-201ENST00000636973 1157 ntBASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 MKKS-204ENST00000639674 192 ntBASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 FTO-223ENST00000640179 210 ntTSL 5 BASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC2.79□□□□□ -1.96
CCDC54Q8NEL0 MAPK10-322ENST00000641485 4530 ntBASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 AC109315.1-201ENST00000584143 1347 ntBASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 OR1S2-201ENST00000302592 978 ntBASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 ESD-201ENST00000378697 1079 ntTSL 5 BASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 RNU6-224P-201ENST00000384055 107 ntBASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 MIR620-201ENST00000385232 95 ntBASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 Y_RNA.578-201ENST00000390903 88 ntBASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 RPL31P1-201ENST00000398116 372 ntBASIC2.78□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 89.2 ms