Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC005912.1-201ENST00000495392 255 ntBASIC2.88□□□□□ -1.95
COL18A1P39060 AC068305.1-201ENST00000497406 726 ntBASIC2.88□□□□□ -1.95
COL18A1P39060 AC010451.2-201ENST00000511514 545 ntTSL 4 BASIC2.88□□□□□ -1.95
COL18A1P39060 AC008676.3-201ENST00000521237 435 ntBASIC2.88□□□□□ -1.95
COL18A1P39060 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC2.88□□□□□ -1.95
COL18A1P39060 AC078814.3-201ENST00000553036 491 ntBASIC2.88□□□□□ -1.95
COL18A1P39060 EIF1AXP2-201ENST00000555940 413 ntBASIC2.88□□□□□ -1.95
COL18A1P39060 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC2.88□□□□□ -1.95
COL18A1P39060 ABI1P1-201ENST00000603375 1120 ntBASIC2.88□□□□□ -1.95
COL18A1P39060 AL022099.1-201ENST00000604551 712 ntBASIC2.88□□□□□ -1.95
COL18A1P39060 TP73-AS1.1-201ENST00000611447 161 ntBASIC2.88□□□□□ -1.95
COL18A1P39060 AC245517.5-201ENST00000611529 162 ntBASIC2.88□□□□□ -1.95
COL18A1P39060 AL391597.1-201ENST00000618707 694 ntBASIC2.88□□□□□ -1.95
COL18A1P39060 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC2.88□□□□□ -1.95
COL18A1P39060 AL512643.1-201ENST00000635735 524 ntBASIC2.88□□□□□ -1.95
COL18A1P39060 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC2.88□□□□□ -1.95
COL18A1P39060 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.88□□□□□ -1.95
COL18A1P39060 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
COL18A1P39060 AC096656.1-201ENST00000623826 1364 ntBASIC2.88□□□□□ -1.95
COL18A1P39060 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
COL18A1P39060 RNA5SP239-201ENST00000410218 129 ntBASIC2.87□□□□□ -1.95
COL18A1P39060 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC2.87□□□□□ -1.95
COL18A1P39060 GSTA11P-201ENST00000452866 669 ntBASIC2.87□□□□□ -1.95
COL18A1P39060 AC004263.1-201ENST00000479327 332 ntBASIC2.87□□□□□ -1.95
COL18A1P39060 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC2.87□□□□□ -1.95
COL18A1P39060 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC2.87□□□□□ -1.95
COL18A1P39060 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC2.87□□□□□ -1.95
COL18A1P39060 AC008083.2-201ENST00000546707 476 ntBASIC2.87□□□□□ -1.95
COL18A1P39060 VN1R84P-201ENST00000593697 235 ntBASIC2.87□□□□□ -1.95
COL18A1P39060 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.87□□□□□ -1.95
COL18A1P39060 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC2.87□□□□□ -1.95
COL18A1P39060 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.87□□□□□ -1.95
COL18A1P39060 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC2.87□□□□□ -1.95
COL18A1P39060 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC2.87□□□□□ -1.95
COL18A1P39060 WWP1P1-201ENST00000466609 2769 ntBASIC2.87□□□□□ -1.95
COL18A1P39060 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
COL18A1P39060 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC2.87□□□□□ -1.95
COL18A1P39060 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
COL18A1P39060 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC2.87□□□□□ -1.95
COL18A1P39060 OR6C65-201ENST00000379665 1076 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
COL18A1P39060 RNA5SP213-201ENST00000391031 106 ntBASIC2.87□□□□□ -1.95
COL18A1P39060 AL354719.1-201ENST00000406535 843 ntBASIC2.87□□□□□ -1.95
COL18A1P39060 RPL26P37-201ENST00000411983 438 ntBASIC2.87□□□□□ -1.95
COL18A1P39060 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC2.87□□□□□ -1.95
COL18A1P39060 AL138785.1-201ENST00000425821 331 ntBASIC2.87□□□□□ -1.95
COL18A1P39060 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
COL18A1P39060 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC2.87□□□□□ -1.95
COL18A1P39060 RAD1P2-201ENST00000446414 663 ntBASIC2.87□□□□□ -1.95
COL18A1P39060 AL157827.1-201ENST00000447622 132 ntBASIC2.87□□□□□ -1.95
COL18A1P39060 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC2.87□□□□□ -1.95
COL18A1P39060 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC2.87□□□□□ -1.95
COL18A1P39060 CBX3P5-201ENST00000552017 521 ntBASIC2.87□□□□□ -1.95
COL18A1P39060 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC2.87□□□□□ -1.95
COL18A1P39060 AL355816.1-201ENST00000607951 118 ntBASIC2.87□□□□□ -1.95
COL18A1P39060 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
COL18A1P39060 AC011472.4-201ENST00000615848 491 ntBASIC2.87□□□□□ -1.95
COL18A1P39060 AC139769.3-201ENST00000618383 175 ntBASIC2.87□□□□□ -1.95
COL18A1P39060 CU459211.1-201ENST00000635667 749 ntBASIC2.87□□□□□ -1.95
COL18A1P39060 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.86□□□□□ -1.95
COL18A1P39060 AC025125.1-201ENST00000624743 1922 ntBASIC2.86□□□□□ -1.95
COL18A1P39060 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC2.86□□□□□ -1.95
COL18A1P39060 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
COL18A1P39060 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
COL18A1P39060 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
COL18A1P39060 XIAPP3-201ENST00000312918 795 ntBASIC2.86□□□□□ -1.95
COL18A1P39060 RNU1-17P-201ENST00000363022 152 ntBASIC2.86□□□□□ -1.95
COL18A1P39060 U8.8-201ENST00000365399 135 ntBASIC2.86□□□□□ -1.95
COL18A1P39060 RPL31P52-201ENST00000407532 367 ntBASIC2.86□□□□□ -1.95
COL18A1P39060 SNORA11.4-201ENST00000408823 129 ntBASIC2.86□□□□□ -1.95
COL18A1P39060 AC013404.1-201ENST00000413068 249 ntBASIC2.86□□□□□ -1.95
COL18A1P39060 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC2.86□□□□□ -1.95
COL18A1P39060 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC2.86□□□□□ -1.95
COL18A1P39060 PCNAP1-201ENST00000505363 709 ntBASIC2.86□□□□□ -1.95
COL18A1P39060 RNU6-491P-201ENST00000516099 110 ntBASIC2.86□□□□□ -1.95
COL18A1P39060 ADAM3B-201ENST00000569937 840 ntBASIC2.86□□□□□ -1.95
COL18A1P39060 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC2.86□□□□□ -1.95
COL18A1P39060 AL450489.1-201ENST00000612071 468 ntBASIC2.86□□□□□ -1.95
COL18A1P39060 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
COL18A1P39060 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC2.86□□□□□ -1.95
COL18A1P39060 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC2.86□□□□□ -1.95
COL18A1P39060 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
COL18A1P39060 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC2.86□□□□□ -1.95
COL18A1P39060 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC2.85□□□□□ -1.95
COL18A1P39060 Y_RNA.118-201ENST00000363300 101 ntBASIC2.85□□□□□ -1.95
COL18A1P39060 RNU6-14P-201ENST00000384630 106 ntBASIC2.85□□□□□ -1.95
COL18A1P39060 MIR1287-201ENST00000408492 90 ntBASIC2.85□□□□□ -1.95
COL18A1P39060 AC004866.2-201ENST00000438285 481 ntBASIC2.85□□□□□ -1.95
COL18A1P39060 AC023512.1-201ENST00000444513 499 ntBASIC2.85□□□□□ -1.95
COL18A1P39060 AL118520.1-201ENST00000450770 291 ntBASIC2.85□□□□□ -1.95
COL18A1P39060 AC117522.2-201ENST00000510049 657 ntBASIC2.85□□□□□ -1.95
COL18A1P39060 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.85□□□□□ -1.95
COL18A1P39060 RNU6-295P-201ENST00000516901 104 ntBASIC2.85□□□□□ -1.95
COL18A1P39060 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC2.85□□□□□ -1.95
COL18A1P39060 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.85□□□□□ -1.95
COL18A1P39060 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC2.85□□□□□ -1.95
COL18A1P39060 AC011494.1-201ENST00000596454 237 ntBASIC2.85□□□□□ -1.95
COL18A1P39060 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC2.85□□□□□ -1.95
COL18A1P39060 HSP90AA5P-201ENST00000438353 2192 ntBASIC2.85□□□□□ -1.95
COL18A1P39060 THUMPD3P1-201ENST00000506556 1480 ntBASIC2.85□□□□□ -1.95
COL18A1P39060 AC066616.2-201ENST00000559334 1481 ntBASIC2.85□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 78.3 ms