Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC4.02□□□□□ -1.77
BDNFP23560 AC007991.1-201ENST00000522680 631 ntBASIC4.02□□□□□ -1.77
BDNFP23560 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC4.02□□□□□ -1.77
BDNFP23560 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC4.02□□□□□ -1.77
BDNFP23560 DNAJC8P1-201ENST00000554535 372 ntBASIC4.02□□□□□ -1.77
BDNFP23560 HMGB1P14-201ENST00000557424 591 ntBASIC4.02□□□□□ -1.77
BDNFP23560 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC4.02□□□□□ -1.77
BDNFP23560 MIR4429-201ENST00000580105 73 ntBASIC4.02□□□□□ -1.77
BDNFP23560 MIR3609-201ENST00000582661 80 ntBASIC4.02□□□□□ -1.77
BDNFP23560 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC4.02□□□□□ -1.77
BDNFP23560 MRPS35P3-201ENST00000603189 709 ntBASIC4.02□□□□□ -1.77
BDNFP23560 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC4.02□□□□□ -1.77
BDNFP23560 AL157392.4-201ENST00000609756 345 ntBASIC4.02□□□□□ -1.77
BDNFP23560 AL450472.3-201ENST00000615578 367 ntBASIC4.02□□□□□ -1.77
BDNFP23560 AC090772.4-201ENST00000623599 362 ntBASIC4.02□□□□□ -1.77
BDNFP23560 AC116618.1-201ENST00000634617 774 ntBASIC4.02□□□□□ -1.77
BDNFP23560 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
BDNFP23560 UBE3AP2-201ENST00000429033 2259 ntBASIC4.02□□□□□ -1.77
BDNFP23560 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
BDNFP23560 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC4.02□□□□□ -1.77
BDNFP23560 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC4.02□□□□□ -1.77
BDNFP23560 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
BDNFP23560 ZNF826P-207ENST00000622273 1910 ntBASIC4.01□□□□□ -1.77
BDNFP23560 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC4.01□□□□□ -1.77
BDNFP23560 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC4.01□□□□□ -1.77
BDNFP23560 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.01□□□□□ -1.77
BDNFP23560 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC4.01□□□□□ -1.77
BDNFP23560 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
BDNFP23560 IPO8P1-201ENST00000455509 3109 ntBASIC4.01□□□□□ -1.77
BDNFP23560 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC4.01□□□□□ -1.77
BDNFP23560 RNU6-636P-201ENST00000384598 107 ntBASIC4.01□□□□□ -1.77
BDNFP23560 RNU6-952P-201ENST00000391164 108 ntBASIC4.01□□□□□ -1.77
BDNFP23560 AC092647.1-201ENST00000420654 287 ntBASIC4.01□□□□□ -1.77
BDNFP23560 AC092648.1-201ENST00000425870 423 ntBASIC4.01□□□□□ -1.77
BDNFP23560 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC4.01□□□□□ -1.77
BDNFP23560 AC002381.1-201ENST00000447049 280 ntBASIC4.01□□□□□ -1.77
BDNFP23560 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC4.01□□□□□ -1.77
BDNFP23560 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC4.01□□□□□ -1.77
BDNFP23560 AL133162.1-201ENST00000463228 453 ntBASIC4.01□□□□□ -1.77
BDNFP23560 AC104472.2-201ENST00000469035 601 ntBASIC4.01□□□□□ -1.77
BDNFP23560 AP002812.1-201ENST00000495378 474 ntBASIC4.01□□□□□ -1.77
BDNFP23560 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC4.01□□□□□ -1.77
BDNFP23560 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
BDNFP23560 RAC1P2-201ENST00000511164 579 ntBASIC4.01□□□□□ -1.77
BDNFP23560 RNU6-714P-201ENST00000516963 103 ntBASIC4.01□□□□□ -1.77
BDNFP23560 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC4.01□□□□□ -1.77
BDNFP23560 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
BDNFP23560 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC4.01□□□□□ -1.77
BDNFP23560 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC4.01□□□□□ -1.77
BDNFP23560 AL034351.1-201ENST00000605288 668 ntBASIC4.01□□□□□ -1.77
BDNFP23560 AC107075.1-201ENST00000613695 314 ntBASIC4.01□□□□□ -1.77
BDNFP23560 AC079684.1-201ENST00000621405 437 ntBASIC4.01□□□□□ -1.77
BDNFP23560 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC4.01□□□□□ -1.77
BDNFP23560 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC4.01□□□□□ -1.77
BDNFP23560 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
BDNFP23560 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
BDNFP23560 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
BDNFP23560 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
BDNFP23560 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC4□□□□□ -1.77
BDNFP23560 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC4□□□□□ -1.77
BDNFP23560 ZNF285B-201ENST00000561698 1767 ntBASIC4□□□□□ -1.77
BDNFP23560 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
BDNFP23560 Y_RNA.192-201ENST00000363977 102 ntBASIC4□□□□□ -1.77
BDNFP23560 RNA5SP139-201ENST00000364340 117 ntBASIC4□□□□□ -1.77
BDNFP23560 RNU6-1078P-201ENST00000364522 103 ntBASIC4□□□□□ -1.77
BDNFP23560 MIR23B-201ENST00000384832 97 ntBASIC4□□□□□ -1.77
BDNFP23560 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC4□□□□□ -1.77
BDNFP23560 RPL23AP29-201ENST00000397284 453 ntBASIC4□□□□□ -1.77
BDNFP23560 USP9YP33-201ENST00000412220 421 ntBASIC4□□□□□ -1.77
BDNFP23560 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC4□□□□□ -1.77
BDNFP23560 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC4□□□□□ -1.77
BDNFP23560 AC087650.1-201ENST00000431445 468 ntBASIC4□□□□□ -1.77
BDNFP23560 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC4□□□□□ -1.77
BDNFP23560 USP9YP35-201ENST00000435696 412 ntBASIC4□□□□□ -1.77
BDNFP23560 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC4□□□□□ -1.77
BDNFP23560 RPL26P6-201ENST00000440913 438 ntBASIC4□□□□□ -1.77
BDNFP23560 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC4□□□□□ -1.77
BDNFP23560 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC4□□□□□ -1.77
BDNFP23560 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC4□□□□□ -1.77
BDNFP23560 RPL31P60-201ENST00000478450 367 ntBASIC4□□□□□ -1.77
BDNFP23560 HSPE1P6-201ENST00000479457 291 ntBASIC4□□□□□ -1.77
BDNFP23560 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC4□□□□□ -1.77
BDNFP23560 RNA5SP208-201ENST00000516156 78 ntBASIC4□□□□□ -1.77
BDNFP23560 AC008489.1-201ENST00000524271 483 ntBASIC4□□□□□ -1.77
BDNFP23560 OR7K1P-201ENST00000546439 926 ntBASIC4□□□□□ -1.77
BDNFP23560 IGKV2OR2-8-201ENST00000558710 300 ntBASIC4□□□□□ -1.77
BDNFP23560 AC090877.1-201ENST00000561418 344 ntBASIC4□□□□□ -1.77
BDNFP23560 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC4□□□□□ -1.77
BDNFP23560 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC4□□□□□ -1.77
BDNFP23560 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC4□□□□□ -1.77
BDNFP23560 AC091057.3-201ENST00000602684 733 ntBASIC4□□□□□ -1.77
BDNFP23560 AL133393.1-201ENST00000603277 287 ntBASIC4□□□□□ -1.77
BDNFP23560 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC4□□□□□ -1.77
BDNFP23560 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC4□□□□□ -1.77
BDNFP23560 AC097478.2-201ENST00000610572 514 ntBASIC4□□□□□ -1.77
BDNFP23560 AL133445.2-201ENST00000611191 527 ntBASIC4□□□□□ -1.77
BDNFP23560 AC027309.3-201ENST00000623419 351 ntBASIC4□□□□□ -1.77
BDNFP23560 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC4□□□□□ -1.77
BDNFP23560 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC4□□□□□ -1.77
BDNFP23560 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC3.99□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 116.5 ms