Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 VN1R92P-201ENST00000598511 928 ntBASIC3.31□□□□□ -1.88
HOXD4P09016 AF131215.7-201ENST00000602443 707 ntBASIC3.31□□□□□ -1.88
HOXD4P09016 AC080013.6-201ENST00000606185 215 ntBASIC3.31□□□□□ -1.88
HOXD4P09016 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.31□□□□□ -1.88
HOXD4P09016 AL512506.2-201ENST00000624472 458 ntBASIC3.31□□□□□ -1.88
HOXD4P09016 SNORA50A-202ENST00000629536 136 ntBASIC3.31□□□□□ -1.88
HOXD4P09016 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC3.31□□□□□ -1.88
HOXD4P09016 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.31□□□□□ -1.88
HOXD4P09016 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.31□□□□□ -1.88
HOXD4P09016 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.31□□□□□ -1.88
HOXD4P09016 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
HOXD4P09016 DBF4P1-201ENST00000412976 1892 ntBASIC3.3□□□□□ -1.88
HOXD4P09016 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
HOXD4P09016 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.3□□□□□ -1.88
HOXD4P09016 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.3□□□□□ -1.88
HOXD4P09016 AC005539.1-201ENST00000443768 1479 ntBASIC3.3□□□□□ -1.88
HOXD4P09016 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
HOXD4P09016 ELL2P4-201ENST00000446870 1376 ntBASIC3.3□□□□□ -1.88
HOXD4P09016 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC3.3□□□□□ -1.88
HOXD4P09016 AC138915.3-201ENST00000562908 1389 ntBASIC3.3□□□□□ -1.88
HOXD4P09016 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
HOXD4P09016 Y_RNA.311-201ENST00000365068 96 ntBASIC3.3□□□□□ -1.88
HOXD4P09016 SNORA11.2-201ENST00000408318 127 ntBASIC3.3□□□□□ -1.88
HOXD4P09016 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.3□□□□□ -1.88
HOXD4P09016 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC3.3□□□□□ -1.88
HOXD4P09016 AL365203.2-201ENST00000423444 196 ntBASIC3.3□□□□□ -1.88
HOXD4P09016 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
HOXD4P09016 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC3.3□□□□□ -1.88
HOXD4P09016 CKS1BP5-201ENST00000434172 273 ntBASIC3.3□□□□□ -1.88
HOXD4P09016 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.3□□□□□ -1.88
HOXD4P09016 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.3□□□□□ -1.88
HOXD4P09016 SNORA71B-202ENST00000439232 272 ntBASIC3.3□□□□□ -1.88
HOXD4P09016 MTCYBP3-201ENST00000445588 1137 ntBASIC3.3□□□□□ -1.88
HOXD4P09016 AL606662.1-201ENST00000445763 553 ntBASIC3.3□□□□□ -1.88
HOXD4P09016 DNAJC19P1-201ENST00000455312 319 ntBASIC3.3□□□□□ -1.88
HOXD4P09016 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC3.3□□□□□ -1.88
HOXD4P09016 LINC00888-204ENST00000487386 421 ntBASIC3.3□□□□□ -1.88
HOXD4P09016 AC078817.1-201ENST00000492623 435 ntBASIC3.3□□□□□ -1.88
HOXD4P09016 SETP14-201ENST00000497538 873 ntBASIC3.3□□□□□ -1.88
HOXD4P09016 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC3.3□□□□□ -1.88
HOXD4P09016 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.3□□□□□ -1.88
HOXD4P09016 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC3.3□□□□□ -1.88
HOXD4P09016 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC3.3□□□□□ -1.88
HOXD4P09016 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC3.3□□□□□ -1.88
HOXD4P09016 MTCYBP27-201ENST00000555160 670 ntBASIC3.3□□□□□ -1.88
HOXD4P09016 TRAV15-201ENST00000556680 249 ntBASIC3.3□□□□□ -1.88
HOXD4P09016 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC3.3□□□□□ -1.88
HOXD4P09016 EIF5A2P1-201ENST00000564027 460 ntBASIC3.3□□□□□ -1.88
HOXD4P09016 AC135628.1-201ENST00000568867 534 ntBASIC3.3□□□□□ -1.88
HOXD4P09016 AC022069.1-201ENST00000582910 658 ntBASIC3.3□□□□□ -1.88
HOXD4P09016 VN1R90P-201ENST00000595717 726 ntBASIC3.3□□□□□ -1.88
HOXD4P09016 AC010620.1-201ENST00000601088 1102 ntBASIC3.3□□□□□ -1.88
HOXD4P09016 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC3.3□□□□□ -1.88
HOXD4P09016 AC103881.1-201ENST00000603476 538 ntBASIC3.3□□□□□ -1.88
HOXD4P09016 AC007566.2-201ENST00000603642 413 ntBASIC3.3□□□□□ -1.88
HOXD4P09016 AC121247.2-201ENST00000604776 136 ntBASIC3.3□□□□□ -1.88
HOXD4P09016 AL592221.1-201ENST00000605266 382 ntBASIC3.3□□□□□ -1.88
HOXD4P09016 AC072039.2-201ENST00000608883 439 ntBASIC3.3□□□□□ -1.88
HOXD4P09016 AC005332.6-201ENST00000613178 446 ntBASIC3.3□□□□□ -1.88
HOXD4P09016 AC079248.2-201ENST00000623779 326 ntBASIC3.3□□□□□ -1.88
HOXD4P09016 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
HOXD4P09016 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
HOXD4P09016 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
HOXD4P09016 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.3□□□□□ -1.88
HOXD4P09016 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.29□□□□□ -1.88
HOXD4P09016 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC3.29□□□□□ -1.88
HOXD4P09016 PABPC1P7-201ENST00000413177 1513 ntBASIC3.29□□□□□ -1.88
HOXD4P09016 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
HOXD4P09016 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
HOXD4P09016 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
HOXD4P09016 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
HOXD4P09016 AC107982.1-201ENST00000507171 1300 ntBASIC3.29□□□□□ -1.88
HOXD4P09016 RNU6-931P-201ENST00000363850 107 ntBASIC3.29□□□□□ -1.88
HOXD4P09016 RNA5SP267-201ENST00000364893 126 ntBASIC3.29□□□□□ -1.88
HOXD4P09016 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC3.29□□□□□ -1.88
HOXD4P09016 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
HOXD4P09016 RNU6-444P-201ENST00000383988 108 ntBASIC3.29□□□□□ -1.88
HOXD4P09016 RNU6-1200P-201ENST00000384162 107 ntBASIC3.29□□□□□ -1.88
HOXD4P09016 MIR634-201ENST00000385208 97 ntBASIC3.29□□□□□ -1.88
HOXD4P09016 SKINT1L-201ENST00000401057 817 ntBASIC3.29□□□□□ -1.88
HOXD4P09016 NDUFB4P4-201ENST00000404822 243 ntBASIC3.29□□□□□ -1.88
HOXD4P09016 AL355379.1-201ENST00000405542 640 ntBASIC3.29□□□□□ -1.88
HOXD4P09016 MIR1250-201ENST00000408098 113 ntBASIC3.29□□□□□ -1.88
HOXD4P09016 Z92545.1-201ENST00000411782 234 ntBASIC3.29□□□□□ -1.88
HOXD4P09016 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC3.29□□□□□ -1.88
HOXD4P09016 RPS3AP9-201ENST00000417027 792 ntBASIC3.29□□□□□ -1.88
HOXD4P09016 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC3.29□□□□□ -1.88
HOXD4P09016 AC245054.1-201ENST00000420944 258 ntBASIC3.29□□□□□ -1.88
HOXD4P09016 MTCO3P1-205ENST00000422088 832 ntBASIC3.29□□□□□ -1.88
HOXD4P09016 AL158156.1-201ENST00000422509 473 ntBASIC3.29□□□□□ -1.88
HOXD4P09016 AC233981.1-201ENST00000423224 461 ntBASIC3.29□□□□□ -1.88
HOXD4P09016 MTND4P20-201ENST00000424125 869 ntBASIC3.29□□□□□ -1.88
HOXD4P09016 AC234781.2-201ENST00000426370 994 ntBASIC3.29□□□□□ -1.88
HOXD4P09016 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC3.29□□□□□ -1.88
HOXD4P09016 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.29□□□□□ -1.88
HOXD4P09016 AC005345.1-201ENST00000431868 217 ntBASIC3.29□□□□□ -1.88
HOXD4P09016 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC3.29□□□□□ -1.88
HOXD4P09016 HMGN2P21-201ENST00000447764 270 ntBASIC3.29□□□□□ -1.88
HOXD4P09016 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC3.29□□□□□ -1.88
HOXD4P09016 RPS27P29-201ENST00000463110 252 ntBASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 120.5 ms