Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 RPS26P30-201ENST00000443431 335 ntBASIC3.44□□□□□ -1.86
CCDC88BA6NC98 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC3.44□□□□□ -1.86
CCDC88BA6NC98 AL645939.1-201ENST00000453429 797 ntBASIC3.44□□□□□ -1.86
CCDC88BA6NC98 SNORD13-201ENST00000459299 104 ntBASIC3.44□□□□□ -1.86
CCDC88BA6NC98 AC090695.1-201ENST00000561269 1222 ntBASIC3.44□□□□□ -1.86
CCDC88BA6NC98 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC3.44□□□□□ -1.86
CCDC88BA6NC98 AC244517.12-201ENST00000623581 663 ntBASIC3.44□□□□□ -1.86
CCDC88BA6NC98 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC3.44□□□□□ -1.86
CCDC88BA6NC98 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC3.44□□□□□ -1.86
CCDC88BA6NC98 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
CCDC88BA6NC98 XIAPP3-201ENST00000312918 795 ntBASIC3.43□□□□□ -1.86
CCDC88BA6NC98 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
CCDC88BA6NC98 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC3.43□□□□□ -1.86
CCDC88BA6NC98 RNU6-826P-201ENST00000516827 104 ntBASIC3.43□□□□□ -1.86
CCDC88BA6NC98 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC3.43□□□□□ -1.86
CCDC88BA6NC98 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC3.43□□□□□ -1.86
CCDC88BA6NC98 MAGOH2P-202ENST00000584384 429 ntBASIC3.43□□□□□ -1.86
CCDC88BA6NC98 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC3.43□□□□□ -1.86
CCDC88BA6NC98 AC091953.2-201ENST00000623979 160 ntBASIC3.43□□□□□ -1.86
CCDC88BA6NC98 AC244517.1-201ENST00000606030 2086 ntBASIC3.43□□□□□ -1.86
CCDC88BA6NC98 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC3.43□□□□□ -1.86
CCDC88BA6NC98 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
CCDC88BA6NC98 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC3.43□□□□□ -1.86
CCDC88BA6NC98 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.43□□□□□ -1.86
CCDC88BA6NC98 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
CCDC88BA6NC98 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.42□□□□□ -1.86
CCDC88BA6NC98 SNORA40.18-201ENST00000391200 128 ntBASIC3.42□□□□□ -1.86
CCDC88BA6NC98 AC009302.1-201ENST00000417147 390 ntBASIC3.42□□□□□ -1.86
CCDC88BA6NC98 CBWD4P-201ENST00000445695 655 ntBASIC3.42□□□□□ -1.86
CCDC88BA6NC98 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC3.42□□□□□ -1.86
CCDC88BA6NC98 MTAPP1-201ENST00000489154 819 ntBASIC3.42□□□□□ -1.86
CCDC88BA6NC98 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC3.42□□□□□ -1.86
CCDC88BA6NC98 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
CCDC88BA6NC98 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC3.42□□□□□ -1.86
CCDC88BA6NC98 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.42□□□□□ -1.86
CCDC88BA6NC98 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC3.41□□□□□ -1.86
CCDC88BA6NC98 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC3.41□□□□□ -1.86
CCDC88BA6NC98 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC3.41□□□□□ -1.86
CCDC88BA6NC98 MIR3683-201ENST00000580847 82 ntBASIC3.41□□□□□ -1.86
CCDC88BA6NC98 BNIP3P8-201ENST00000597863 560 ntBASIC3.41□□□□□ -1.86
CCDC88BA6NC98 AP000787.2-201ENST00000604432 568 ntBASIC3.41□□□□□ -1.86
CCDC88BA6NC98 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
CCDC88BA6NC98 RNU6-457P-201ENST00000363999 107 ntBASIC3.41□□□□□ -1.86
CCDC88BA6NC98 LUZP4P1-201ENST00000415420 344 ntBASIC3.41□□□□□ -1.86
CCDC88BA6NC98 USP9YP7-201ENST00000436723 430 ntBASIC3.41□□□□□ -1.86
CCDC88BA6NC98 USP9YP32-201ENST00000452432 430 ntBASIC3.41□□□□□ -1.86
CCDC88BA6NC98 RPL23AP62-201ENST00000463396 453 ntBASIC3.41□□□□□ -1.86
CCDC88BA6NC98 AC008571.1-201ENST00000467232 300 ntBASIC3.41□□□□□ -1.86
CCDC88BA6NC98 AC007182.2-201ENST00000489251 402 ntBASIC3.41□□□□□ -1.86
CCDC88BA6NC98 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC3.41□□□□□ -1.86
CCDC88BA6NC98 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC3.41□□□□□ -1.86
CCDC88BA6NC98 AC087241.2-201ENST00000535801 324 ntBASIC3.41□□□□□ -1.86
CCDC88BA6NC98 AC091834.1-201ENST00000614543 472 ntBASIC3.41□□□□□ -1.86
CCDC88BA6NC98 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
CCDC88BA6NC98 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
CCDC88BA6NC98 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC3.4□□□□□ -1.87
CCDC88BA6NC98 OR4K11P-201ENST00000431829 904 ntBASIC3.4□□□□□ -1.87
CCDC88BA6NC98 ATG10-AS1-201ENST00000504846 648 ntBASIC3.4□□□□□ -1.87
CCDC88BA6NC98 AC128687.1-201ENST00000605304 619 ntBASIC3.4□□□□□ -1.87
CCDC88BA6NC98 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC3.4□□□□□ -1.87
CCDC88BA6NC98 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC3.4□□□□□ -1.87
CCDC88BA6NC98 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
CCDC88BA6NC98 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC3.4□□□□□ -1.87
CCDC88BA6NC98 AP005901.5-201ENST00000545779 1796 ntBASIC3.39□□□□□ -1.87
CCDC88BA6NC98 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
CCDC88BA6NC98 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC3.39□□□□□ -1.87
CCDC88BA6NC98 RPL23AP63-201ENST00000498752 471 ntBASIC3.39□□□□□ -1.87
CCDC88BA6NC98 GZMAP1-201ENST00000503054 631 ntBASIC3.39□□□□□ -1.87
CCDC88BA6NC98 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC3.39□□□□□ -1.87
CCDC88BA6NC98 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC3.39□□□□□ -1.87
CCDC88BA6NC98 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC3.39□□□□□ -1.87
CCDC88BA6NC98 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC3.39□□□□□ -1.87
CCDC88BA6NC98 MIR4255-201ENST00000579351 72 ntBASIC3.39□□□□□ -1.87
CCDC88BA6NC98 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.38□□□□□ -1.87
CCDC88BA6NC98 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC3.38□□□□□ -1.87
CCDC88BA6NC98 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC3.38□□□□□ -1.87
CCDC88BA6NC98 AC104435.1-201ENST00000483483 166 ntBASIC3.38□□□□□ -1.87
CCDC88BA6NC98 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC3.38□□□□□ -1.87
CCDC88BA6NC98 OR5D17P-201ENST00000531492 978 ntBASIC3.38□□□□□ -1.87
CCDC88BA6NC98 AC068446.3-201ENST00000555285 382 ntBASIC3.38□□□□□ -1.87
CCDC88BA6NC98 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.38□□□□□ -1.87
CCDC88BA6NC98 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC3.38□□□□□ -1.87
CCDC88BA6NC98 ABI1P1-201ENST00000603375 1120 ntBASIC3.38□□□□□ -1.87
CCDC88BA6NC98 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC3.37□□□□□ -1.87
CCDC88BA6NC98 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
CCDC88BA6NC98 Y_RNA.164-201ENST00000363709 102 ntBASIC3.37□□□□□ -1.87
CCDC88BA6NC98 RNA5SP181-201ENST00000410246 98 ntBASIC3.37□□□□□ -1.87
CCDC88BA6NC98 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC3.37□□□□□ -1.87
CCDC88BA6NC98 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
CCDC88BA6NC98 AC027124.2-201ENST00000428249 105 ntBASIC3.37□□□□□ -1.87
CCDC88BA6NC98 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC3.37□□□□□ -1.87
CCDC88BA6NC98 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC3.37□□□□□ -1.87
CCDC88BA6NC98 HMGB1P1-201ENST00000522557 636 ntBASIC3.37□□□□□ -1.87
CCDC88BA6NC98 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC3.37□□□□□ -1.87
CCDC88BA6NC98 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC3.37□□□□□ -1.87
CCDC88BA6NC98 PSMA6P4-201ENST00000603247 718 ntBASIC3.37□□□□□ -1.87
CCDC88BA6NC98 AP003117.2-201ENST00000606010 545 ntBASIC3.37□□□□□ -1.87
CCDC88BA6NC98 snoU13.31-201ENST00000607291 104 ntBASIC3.37□□□□□ -1.87
CCDC88BA6NC98 AC006378.2-201ENST00000623178 2476 ntBASIC3.37□□□□□ -1.87
CCDC88BA6NC98 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC3.37□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms