Protein–RNA interactions for Protein: Q9ULD4

BRPF3, Bromodomain and PHD finger-containing protein 3, humanhuman

Predictions only

Length 1,205 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRPF3Q9ULD4 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC5.99□□□□□ -1.45
BRPF3Q9ULD4 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
BRPF3Q9ULD4 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC5.99□□□□□ -1.45
BRPF3Q9ULD4 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC5.98□□□□□ -1.45
BRPF3Q9ULD4 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
BRPF3Q9ULD4 MTND4P35-201ENST00000604257 1375 ntBASIC5.98□□□□□ -1.45
BRPF3Q9ULD4 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
BRPF3Q9ULD4 Y_RNA.67-201ENST00000362870 100 ntBASIC5.98□□□□□ -1.45
BRPF3Q9ULD4 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
BRPF3Q9ULD4 SNORA2.3-201ENST00000383920 135 ntBASIC5.98□□□□□ -1.45
BRPF3Q9ULD4 Y_RNA.419-201ENST00000384041 102 ntBASIC5.98□□□□□ -1.45
BRPF3Q9ULD4 RNU1-106P-201ENST00000384382 164 ntBASIC5.98□□□□□ -1.45
BRPF3Q9ULD4 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
BRPF3Q9ULD4 MIR1178-201ENST00000408396 91 ntBASIC5.98□□□□□ -1.45
BRPF3Q9ULD4 RNU6-1148P-201ENST00000410992 104 ntBASIC5.98□□□□□ -1.45
BRPF3Q9ULD4 MTND3P8-201ENST00000412909 339 ntBASIC5.98□□□□□ -1.45
BRPF3Q9ULD4 MTCYBP8-201ENST00000422855 651 ntBASIC5.98□□□□□ -1.45
BRPF3Q9ULD4 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC5.98□□□□□ -1.45
BRPF3Q9ULD4 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC5.98□□□□□ -1.45
BRPF3Q9ULD4 RHOT1P3-201ENST00000436571 331 ntBASIC5.98□□□□□ -1.45
BRPF3Q9ULD4 AL353691.1-201ENST00000451332 387 ntBASIC5.98□□□□□ -1.45
BRPF3Q9ULD4 AC005008.1-201ENST00000456151 612 ntBASIC5.98□□□□□ -1.45
BRPF3Q9ULD4 AC108059.3-201ENST00000456388 214 ntBASIC5.98□□□□□ -1.45
BRPF3Q9ULD4 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC5.98□□□□□ -1.45
BRPF3Q9ULD4 COX7A2P2-201ENST00000505291 250 ntBASIC5.98□□□□□ -1.45
BRPF3Q9ULD4 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC5.98□□□□□ -1.45
BRPF3Q9ULD4 SNORA19.2-201ENST00000516013 114 ntBASIC5.98□□□□□ -1.45
BRPF3Q9ULD4 AC011979.2-201ENST00000527568 352 ntBASIC5.98□□□□□ -1.45
BRPF3Q9ULD4 AC005868.1-201ENST00000536421 331 ntBASIC5.98□□□□□ -1.45
BRPF3Q9ULD4 MGST1-215ENST00000540056 546 ntTSL 3 BASIC5.98□□□□□ -1.45
BRPF3Q9ULD4 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC5.98□□□□□ -1.45
BRPF3Q9ULD4 COX6CP3-201ENST00000580869 223 ntBASIC5.98□□□□□ -1.45
BRPF3Q9ULD4 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC5.98□□□□□ -1.45
BRPF3Q9ULD4 AP001029.3-201ENST00000588063 596 ntBASIC5.98□□□□□ -1.45
BRPF3Q9ULD4 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC5.98□□□□□ -1.45
BRPF3Q9ULD4 AC103710.2-201ENST00000609912 942 ntBASIC5.98□□□□□ -1.45
BRPF3Q9ULD4 AL590099.1-201ENST00000615276 138 ntBASIC5.98□□□□□ -1.45
BRPF3Q9ULD4 AC099494.2-201ENST00000623371 978 ntBASIC5.98□□□□□ -1.45
BRPF3Q9ULD4 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC5.98□□□□□ -1.45
BRPF3Q9ULD4 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC5.98□□□□□ -1.45
BRPF3Q9ULD4 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC5.98□□□□□ -1.45
BRPF3Q9ULD4 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
BRPF3Q9ULD4 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC5.98□□□□□ -1.45
BRPF3Q9ULD4 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
BRPF3Q9ULD4 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC5.98□□□□□ -1.45
BRPF3Q9ULD4 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC5.98□□□□□ -1.45
BRPF3Q9ULD4 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 THAP12P4-201ENST00000528321 2266 ntBASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 Y_RNA.22-201ENST00000362492 102 ntBASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 RNVU1-3-201ENST00000364313 161 ntBASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 RNU6-692P-201ENST00000384496 107 ntBASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 SNORD37.1-201ENST00000390968 65 ntBASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 AL592291.1-201ENST00000403830 352 ntBASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 AL590004.1-201ENST00000405321 300 ntBASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 U3.36-201ENST00000408418 213 ntBASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 RNU6ATAC21P-201ENST00000408656 126 ntBASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 DUTP6-201ENST00000425573 462 ntBASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 IFNA20P-201ENST00000436840 528 ntBASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 RPL34P20-201ENST00000442771 351 ntBASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 RPL21P89-201ENST00000444021 467 ntBASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 SNORD121B-201ENST00000458838 81 ntBASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 RPS18P6-201ENST00000476880 458 ntBASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 AC105417.1-201ENST00000514691 285 ntBASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 RNU6-1314P-201ENST00000517139 104 ntBASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 IGLVIV-53-201ENST00000520107 367 ntBASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 AC005668.1-201ENST00000571142 476 ntBASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 AC010591.1-201ENST00000603941 649 ntBASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 AL121992.2-201ENST00000606262 256 ntBASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 AC079684.1-201ENST00000621405 437 ntBASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 AC005086.4-201ENST00000623065 213 ntBASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 AL138713.1-201ENST00000624026 2130 ntBASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 AL645937.1-201ENST00000641739 1652 ntBASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 TLK1P1-201ENST00000456760 2440 ntBASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 ASNSP3-201ENST00000451989 1306 ntBASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC5.97□□□□□ -1.45
BRPF3Q9ULD4 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
BRPF3Q9ULD4 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
BRPF3Q9ULD4 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC5.96□□□□□ -1.45
BRPF3Q9ULD4 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 104.9 ms