Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 MTCO3P2-201ENST00000457365 171 ntBASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 snoU13.3-201ENST00000459441 104 ntBASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 RPL31P13-201ENST00000484151 370 ntBASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 MTATP6P9-201ENST00000515039 680 ntBASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 ARL2BPP5-201ENST00000523141 481 ntBASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 AC021451.1-201ENST00000523498 1129 ntBASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 MTCYBP41-201ENST00000528913 1123 ntBASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 AP003385.6-201ENST00000531603 374 ntBASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 AC090502.2-201ENST00000549267 280 ntBASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 AL669831.4-202ENST00000590817 238 ntBASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 AC012493.2-201ENST00000595083 291 ntBASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 BNIP3P39-201ENST00000601077 554 ntBASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 AL158163.2-201ENST00000619110 700 ntBASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 PLCE1P1-201ENST00000622094 305 ntBASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC3.54□□□□□ -1.84
VPS54Q9P1Q0 DBF4P1-201ENST00000412976 1892 ntBASIC3.54□□□□□ -1.84
VPS54Q9P1Q0 ZNF33BP1-201ENST00000452497 1834 ntBASIC3.54□□□□□ -1.84
VPS54Q9P1Q0 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
VPS54Q9P1Q0 MIR148B-201ENST00000362252 99 ntBASIC3.54□□□□□ -1.84
VPS54Q9P1Q0 RNA5SP295-201ENST00000362655 121 ntBASIC3.54□□□□□ -1.84
VPS54Q9P1Q0 RNU6-925P-201ENST00000384629 104 ntBASIC3.54□□□□□ -1.84
VPS54Q9P1Q0 MTND4LP20-201ENST00000402379 270 ntBASIC3.54□□□□□ -1.84
VPS54Q9P1Q0 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.54□□□□□ -1.84
VPS54Q9P1Q0 OR4K6P-201ENST00000416478 897 ntBASIC3.54□□□□□ -1.84
VPS54Q9P1Q0 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.54□□□□□ -1.84
VPS54Q9P1Q0 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC3.54□□□□□ -1.84
VPS54Q9P1Q0 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC3.54□□□□□ -1.84
VPS54Q9P1Q0 AL512649.1-201ENST00000428997 581 ntBASIC3.54□□□□□ -1.84
VPS54Q9P1Q0 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC3.54□□□□□ -1.84
VPS54Q9P1Q0 MTCO1P53-201ENST00000441633 699 ntBASIC3.54□□□□□ -1.84
VPS54Q9P1Q0 AL662791.1-201ENST00000441992 928 ntBASIC3.54□□□□□ -1.84
VPS54Q9P1Q0 TRBV26-201ENST00000456572 344 ntBASIC3.54□□□□□ -1.84
VPS54Q9P1Q0 RPS3AP43-201ENST00000479743 781 ntBASIC3.54□□□□□ -1.84
VPS54Q9P1Q0 VPS26AP1-201ENST00000483197 979 ntBASIC3.54□□□□□ -1.84
VPS54Q9P1Q0 RPS4XP13-201ENST00000483219 789 ntBASIC3.54□□□□□ -1.84
VPS54Q9P1Q0 RN7SL20P-201ENST00000488827 297 ntBASIC3.54□□□□□ -1.84
VPS54Q9P1Q0 OR5H5P-201ENST00000503164 928 ntBASIC3.54□□□□□ -1.84
VPS54Q9P1Q0 HMGB3P15-201ENST00000507326 574 ntBASIC3.54□□□□□ -1.84
VPS54Q9P1Q0 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.54□□□□□ -1.84
VPS54Q9P1Q0 AC008885.1-201ENST00000514930 301 ntBASIC3.54□□□□□ -1.84
VPS54Q9P1Q0 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.54□□□□□ -1.84
VPS54Q9P1Q0 RNU4ATAC10P-201ENST00000516967 122 ntBASIC3.54□□□□□ -1.84
VPS54Q9P1Q0 AC068657.1-201ENST00000520807 306 ntBASIC3.54□□□□□ -1.84
VPS54Q9P1Q0 ZNF705CP-201ENST00000530515 889 ntBASIC3.54□□□□□ -1.84
VPS54Q9P1Q0 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.54□□□□□ -1.84
VPS54Q9P1Q0 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC3.54□□□□□ -1.84
VPS54Q9P1Q0 AC124312.4-201ENST00000605533 310 ntBASIC3.54□□□□□ -1.84
VPS54Q9P1Q0 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.54□□□□□ -1.84
VPS54Q9P1Q0 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.54□□□□□ -1.84
VPS54Q9P1Q0 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
VPS54Q9P1Q0 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.54□□□□□ -1.84
VPS54Q9P1Q0 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.54□□□□□ -1.84
VPS54Q9P1Q0 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
VPS54Q9P1Q0 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
VPS54Q9P1Q0 AC073325.2-201ENST00000339545 159 ntBASIC3.53□□□□□ -1.84
VPS54Q9P1Q0 RNU6-600P-201ENST00000362524 99 ntBASIC3.53□□□□□ -1.84
VPS54Q9P1Q0 RNU6-989P-201ENST00000362756 107 ntBASIC3.53□□□□□ -1.84
VPS54Q9P1Q0 SNORA7.2-201ENST00000364446 145 ntBASIC3.53□□□□□ -1.84
VPS54Q9P1Q0 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.53□□□□□ -1.84
VPS54Q9P1Q0 RNU6-657P-201ENST00000383904 107 ntBASIC3.53□□□□□ -1.84
VPS54Q9P1Q0 RNU6-761P-201ENST00000384148 107 ntBASIC3.53□□□□□ -1.84
VPS54Q9P1Q0 DPRXP1-201ENST00000426312 460 ntBASIC3.53□□□□□ -1.84
VPS54Q9P1Q0 AC006946.1-201ENST00000429106 328 ntBASIC3.53□□□□□ -1.84
VPS54Q9P1Q0 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC3.53□□□□□ -1.84
VPS54Q9P1Q0 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC3.53□□□□□ -1.84
VPS54Q9P1Q0 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.53□□□□□ -1.84
VPS54Q9P1Q0 AC127537.2-201ENST00000439258 465 ntBASIC3.53□□□□□ -1.84
VPS54Q9P1Q0 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC3.53□□□□□ -1.84
VPS54Q9P1Q0 snoU13.22-201ENST00000459428 104 ntBASIC3.53□□□□□ -1.84
VPS54Q9P1Q0 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.53□□□□□ -1.84
VPS54Q9P1Q0 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC3.53□□□□□ -1.84
VPS54Q9P1Q0 AC119751.4-201ENST00000507498 357 ntBASIC3.53□□□□□ -1.84
VPS54Q9P1Q0 TXNP6-201ENST00000510190 310 ntBASIC3.53□□□□□ -1.84
VPS54Q9P1Q0 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC3.53□□□□□ -1.84
VPS54Q9P1Q0 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC3.53□□□□□ -1.84
VPS54Q9P1Q0 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.53□□□□□ -1.84
VPS54Q9P1Q0 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.53□□□□□ -1.84
VPS54Q9P1Q0 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC3.53□□□□□ -1.84
VPS54Q9P1Q0 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.53□□□□□ -1.84
VPS54Q9P1Q0 DPRXP5-201ENST00000604662 539 ntBASIC3.53□□□□□ -1.84
VPS54Q9P1Q0 AC026634.1-201ENST00000634369 198 ntBASIC3.53□□□□□ -1.84
VPS54Q9P1Q0 AC099654.9-201ENST00000637055 678 ntBASIC3.53□□□□□ -1.84
VPS54Q9P1Q0 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.53□□□□□ -1.84
VPS54Q9P1Q0 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.53□□□□□ -1.84
VPS54Q9P1Q0 AP005901.5-201ENST00000545779 1796 ntBASIC3.53□□□□□ -1.84
VPS54Q9P1Q0 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC3.53□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 126.6 ms