Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 MIR16-2-201ENST00000362117 81 ntBASIC3.28□□□□□ -1.88
TM9SF3Q9HD45 RNU5D-1-201ENST00000363299 116 ntBASIC3.28□□□□□ -1.88
TM9SF3Q9HD45 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.28□□□□□ -1.88
TM9SF3Q9HD45 RNU6-1027P-201ENST00000383998 107 ntBASIC3.28□□□□□ -1.88
TM9SF3Q9HD45 RPS4XP3-201ENST00000398541 413 ntBASIC3.28□□□□□ -1.88
TM9SF3Q9HD45 AL158050.1-201ENST00000416077 457 ntBASIC3.28□□□□□ -1.88
TM9SF3Q9HD45 BOLA3P4-201ENST00000418151 400 ntBASIC3.28□□□□□ -1.88
TM9SF3Q9HD45 AL606495.1-201ENST00000422100 813 ntBASIC3.28□□□□□ -1.88
TM9SF3Q9HD45 AC246680.2-201ENST00000422106 389 ntBASIC3.28□□□□□ -1.88
TM9SF3Q9HD45 MTCO2P1-201ENST00000424648 477 ntBASIC3.28□□□□□ -1.88
TM9SF3Q9HD45 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC3.28□□□□□ -1.88
TM9SF3Q9HD45 AL353705.1-201ENST00000433468 480 ntBASIC3.28□□□□□ -1.88
TM9SF3Q9HD45 AL590664.1-201ENST00000448065 339 ntBASIC3.28□□□□□ -1.88
TM9SF3Q9HD45 GTF2IP12-201ENST00000456547 356 ntBASIC3.28□□□□□ -1.88
TM9SF3Q9HD45 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC3.28□□□□□ -1.88
TM9SF3Q9HD45 snoU109.4-201ENST00000458953 143 ntBASIC3.28□□□□□ -1.88
TM9SF3Q9HD45 AC109925.1-201ENST00000478069 331 ntBASIC3.28□□□□□ -1.88
TM9SF3Q9HD45 RPS3AP14-201ENST00000483907 780 ntBASIC3.28□□□□□ -1.88
TM9SF3Q9HD45 AC011825.1-201ENST00000484967 388 ntBASIC3.28□□□□□ -1.88
TM9SF3Q9HD45 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3.28□□□□□ -1.88
TM9SF3Q9HD45 AC114967.1-201ENST00000504890 259 ntBASIC3.28□□□□□ -1.88
TM9SF3Q9HD45 AP000916.1-201ENST00000533869 835 ntBASIC3.28□□□□□ -1.88
TM9SF3Q9HD45 HIGD1AP1-201ENST00000550979 275 ntBASIC3.28□□□□□ -1.88
TM9SF3Q9HD45 EEF1B2P4-201ENST00000551398 348 ntBASIC3.28□□□□□ -1.88
TM9SF3Q9HD45 AC090666.1-201ENST00000578241 445 ntBASIC3.28□□□□□ -1.88
TM9SF3Q9HD45 AL158211.2-201ENST00000607282 395 ntBASIC3.28□□□□□ -1.88
TM9SF3Q9HD45 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.28□□□□□ -1.88
TM9SF3Q9HD45 VN1R9P-201ENST00000614184 867 ntBASIC3.28□□□□□ -1.88
TM9SF3Q9HD45 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC3.28□□□□□ -1.88
TM9SF3Q9HD45 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.28□□□□□ -1.88
TM9SF3Q9HD45 CR383658.2-201ENST00000547576 1525 ntBASIC3.28□□□□□ -1.88
TM9SF3Q9HD45 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.28□□□□□ -1.89
TM9SF3Q9HD45 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.27□□□□□ -1.89
TM9SF3Q9HD45 AL512283.1-201ENST00000606756 1384 ntBASIC3.27□□□□□ -1.89
TM9SF3Q9HD45 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC3.27□□□□□ -1.89
TM9SF3Q9HD45 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.27□□□□□ -1.89
TM9SF3Q9HD45 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
TM9SF3Q9HD45 MIR422A-201ENST00000362286 90 ntBASIC3.27□□□□□ -1.89
TM9SF3Q9HD45 RNA5SP383-201ENST00000362934 120 ntBASIC3.27□□□□□ -1.89
TM9SF3Q9HD45 Y_RNA.110-201ENST00000363220 99 ntBASIC3.27□□□□□ -1.89
TM9SF3Q9HD45 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
TM9SF3Q9HD45 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
TM9SF3Q9HD45 CD24P4-201ENST00000382840 243 ntBASIC3.27□□□□□ -1.89
TM9SF3Q9HD45 SNORD65C-201ENST00000390962 71 ntBASIC3.27□□□□□ -1.89
TM9SF3Q9HD45 RNU2-72P-201ENST00000411175 163 ntBASIC3.27□□□□□ -1.89
TM9SF3Q9HD45 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
TM9SF3Q9HD45 TMEM167AP1-201ENST00000423409 219 ntBASIC3.27□□□□□ -1.89
TM9SF3Q9HD45 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.27□□□□□ -1.89
TM9SF3Q9HD45 RPL23AP82-202ENST00000427528 469 ntBASIC3.27□□□□□ -1.89
TM9SF3Q9HD45 MTND4LP10-201ENST00000435146 291 ntBASIC3.27□□□□□ -1.89
TM9SF3Q9HD45 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC3.27□□□□□ -1.89
TM9SF3Q9HD45 IGKV1OR-3-201ENST00000446944 348 ntBASIC3.27□□□□□ -1.89
TM9SF3Q9HD45 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC3.27□□□□□ -1.89
TM9SF3Q9HD45 RSL24D1P3-201ENST00000449255 495 ntBASIC3.27□□□□□ -1.89
TM9SF3Q9HD45 HMGN1P18-201ENST00000457642 277 ntBASIC3.27□□□□□ -1.89
TM9SF3Q9HD45 CENPBD1P1-201ENST00000464061 469 ntBASIC3.27□□□□□ -1.89
TM9SF3Q9HD45 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
TM9SF3Q9HD45 RN7SKP282-201ENST00000516824 299 ntBASIC3.27□□□□□ -1.89
TM9SF3Q9HD45 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC3.27□□□□□ -1.89
TM9SF3Q9HD45 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
TM9SF3Q9HD45 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.27□□□□□ -1.89
TM9SF3Q9HD45 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
TM9SF3Q9HD45 APAF1-207ENST00000547743 651 ntTSL 3 BASIC3.27□□□□□ -1.89
TM9SF3Q9HD45 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC3.27□□□□□ -1.89
TM9SF3Q9HD45 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC3.27□□□□□ -1.89
TM9SF3Q9HD45 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
TM9SF3Q9HD45 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC3.27□□□□□ -1.89
TM9SF3Q9HD45 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3.27□□□□□ -1.89
TM9SF3Q9HD45 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC3.27□□□□□ -1.89
TM9SF3Q9HD45 AC010738.1-201ENST00000604970 987 ntBASIC3.27□□□□□ -1.89
TM9SF3Q9HD45 RPL21P136-201ENST00000605378 396 ntBASIC3.27□□□□□ -1.89
TM9SF3Q9HD45 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.27□□□□□ -1.89
TM9SF3Q9HD45 AL356321.1-201ENST00000621360 228 ntBASIC3.27□□□□□ -1.89
TM9SF3Q9HD45 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC3.27□□□□□ -1.89
TM9SF3Q9HD45 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC3.27□□□□□ -1.89
TM9SF3Q9HD45 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC3.26□□□□□ -1.89
TM9SF3Q9HD45 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
TM9SF3Q9HD45 CD2-201ENST00000369477 478 ntTSL 2 BASIC3.26□□□□□ -1.89
TM9SF3Q9HD45 AP002784.2-201ENST00000397300 549 ntBASIC3.26□□□□□ -1.89
TM9SF3Q9HD45 MTCO2P31-201ENST00000402702 684 ntBASIC3.26□□□□□ -1.89
TM9SF3Q9HD45 AL024474.1-201ENST00000404655 591 ntBASIC3.26□□□□□ -1.89
TM9SF3Q9HD45 MTATP6P19-201ENST00000413797 659 ntBASIC3.26□□□□□ -1.89
TM9SF3Q9HD45 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC3.26□□□□□ -1.89
TM9SF3Q9HD45 AC079780.1-201ENST00000428259 207 ntBASIC3.26□□□□□ -1.89
TM9SF3Q9HD45 AL645638.1-201ENST00000440519 361 ntBASIC3.26□□□□□ -1.89
TM9SF3Q9HD45 AL096803.2-201ENST00000450032 677 ntBASIC3.26□□□□□ -1.89
TM9SF3Q9HD45 RPL23AP67-201ENST00000465341 474 ntBASIC3.26□□□□□ -1.89
TM9SF3Q9HD45 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.26□□□□□ -1.89
TM9SF3Q9HD45 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC3.26□□□□□ -1.89
TM9SF3Q9HD45 KCTD9P5-201ENST00000504141 1170 ntBASIC3.26□□□□□ -1.89
TM9SF3Q9HD45 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC3.26□□□□□ -1.89
TM9SF3Q9HD45 AC107934.2-201ENST00000518653 310 ntBASIC3.26□□□□□ -1.89
TM9SF3Q9HD45 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC3.26□□□□□ -1.89
TM9SF3Q9HD45 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC3.26□□□□□ -1.89
TM9SF3Q9HD45 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC3.26□□□□□ -1.89
TM9SF3Q9HD45 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC3.26□□□□□ -1.89
TM9SF3Q9HD45 LARP7P3-201ENST00000579888 337 ntBASIC3.26□□□□□ -1.89
TM9SF3Q9HD45 AC098483.2-201ENST00000603158 454 ntBASIC3.26□□□□□ -1.89
TM9SF3Q9HD45 AC106900.2-201ENST00000604994 317 ntBASIC3.26□□□□□ -1.89
TM9SF3Q9HD45 MIR6852-201ENST00000621699 66 ntBASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 135.3 ms