Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 BX664608.1-201ENST00000610519 487 ntBASIC2.86□□□□□ -1.95
CCDC88AQ3V6T2 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC2.86□□□□□ -1.95
CCDC88AQ3V6T2 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC2.86□□□□□ -1.95
CCDC88AQ3V6T2 MIR4278-201ENST00000636094 69 ntBASIC2.86□□□□□ -1.95
CCDC88AQ3V6T2 AC010733.2-201ENST00000589496 5702 ntBASIC2.85□□□□□ -1.95
CCDC88AQ3V6T2 AC025125.1-201ENST00000624743 1922 ntBASIC2.85□□□□□ -1.95
CCDC88AQ3V6T2 FRG1BP-201ENST00000278882 761 ntBASIC2.85□□□□□ -1.95
CCDC88AQ3V6T2 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
CCDC88AQ3V6T2 RBM6-203ENST00000421682 684 ntTSL 2 BASIC2.85□□□□□ -1.95
CCDC88AQ3V6T2 AC018634.1-201ENST00000437554 401 ntBASIC2.85□□□□□ -1.95
CCDC88AQ3V6T2 LAMTOR5P1-201ENST00000444290 270 ntBASIC2.85□□□□□ -1.95
CCDC88AQ3V6T2 CASP3P1-201ENST00000446037 609 ntBASIC2.85□□□□□ -1.95
CCDC88AQ3V6T2 RPL36AP33-201ENST00000450395 310 ntBASIC2.85□□□□□ -1.95
CCDC88AQ3V6T2 AP000705.1-201ENST00000454567 350 ntBASIC2.85□□□□□ -1.95
CCDC88AQ3V6T2 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC2.85□□□□□ -1.95
CCDC88AQ3V6T2 RNU6-1218P-201ENST00000458990 108 ntBASIC2.85□□□□□ -1.95
CCDC88AQ3V6T2 HMGB1P41-201ENST00000520234 440 ntBASIC2.85□□□□□ -1.95
CCDC88AQ3V6T2 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.85□□□□□ -1.95
CCDC88AQ3V6T2 C1GALT1P1-201ENST00000548895 1089 ntBASIC2.85□□□□□ -1.95
CCDC88AQ3V6T2 AC083899.3-201ENST00000603413 594 ntBASIC2.85□□□□□ -1.95
CCDC88AQ3V6T2 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC2.85□□□□□ -1.95
CCDC88AQ3V6T2 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC2.85□□□□□ -1.95
CCDC88AQ3V6T2 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC2.84□□□□□ -1.95
CCDC88AQ3V6T2 RNU1-17P-201ENST00000363022 152 ntBASIC2.84□□□□□ -1.95
CCDC88AQ3V6T2 C1orf185-201ENST00000371759 915 ntAPPRIS P2 TSL 2 BASIC2.84□□□□□ -1.95
CCDC88AQ3V6T2 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC2.84□□□□□ -1.95
CCDC88AQ3V6T2 RPL23AP36-201ENST00000413895 458 ntBASIC2.84□□□□□ -1.95
CCDC88AQ3V6T2 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC2.84□□□□□ -1.95
CCDC88AQ3V6T2 ATG3P1-201ENST00000419507 911 ntBASIC2.84□□□□□ -1.95
CCDC88AQ3V6T2 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.84□□□□□ -1.95
CCDC88AQ3V6T2 MAL2-205ENST00000521048 575 ntTSL 4 BASIC2.84□□□□□ -1.95
CCDC88AQ3V6T2 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC2.84□□□□□ -1.95
CCDC88AQ3V6T2 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.84□□□□□ -1.95
CCDC88AQ3V6T2 AC023043.3-201ENST00000593113 385 ntBASIC2.84□□□□□ -1.95
CCDC88AQ3V6T2 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC2.84□□□□□ -1.95
CCDC88AQ3V6T2 AL355816.1-201ENST00000607951 118 ntBASIC2.84□□□□□ -1.95
CCDC88AQ3V6T2 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC2.84□□□□□ -1.95
CCDC88AQ3V6T2 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC2.84□□□□□ -1.95
CCDC88AQ3V6T2 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
CCDC88AQ3V6T2 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.84□□□□□ -1.95
CCDC88AQ3V6T2 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC2.84□□□□□ -1.95
CCDC88AQ3V6T2 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
CCDC88AQ3V6T2 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
CCDC88AQ3V6T2 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC2.84□□□□□ -1.96
CCDC88AQ3V6T2 Z82205.1-201ENST00000428456 297 ntBASIC2.84□□□□□ -1.96
CCDC88AQ3V6T2 RPL31P53-201ENST00000457065 348 ntBASIC2.84□□□□□ -1.96
CCDC88AQ3V6T2 AC092754.2-201ENST00000463506 460 ntBASIC2.84□□□□□ -1.96
CCDC88AQ3V6T2 AC022790.1-201ENST00000522872 204 ntBASIC2.84□□□□□ -1.96
CCDC88AQ3V6T2 ZKSCAN7P1-201ENST00000543668 673 ntBASIC2.84□□□□□ -1.96
CCDC88AQ3V6T2 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC2.84□□□□□ -1.96
CCDC88AQ3V6T2 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC2.84□□□□□ -1.96
CCDC88AQ3V6T2 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC2.84□□□□□ -1.96
CCDC88AQ3V6T2 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC2.84□□□□□ -1.96
CCDC88AQ3V6T2 CR589904.2-201ENST00000612533 440 ntBASIC2.84□□□□□ -1.96
CCDC88AQ3V6T2 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC2.83□□□□□ -1.96
CCDC88AQ3V6T2 CNOT6LP1-201ENST00000559681 1462 ntBASIC2.83□□□□□ -1.96
CCDC88AQ3V6T2 ANKRD62P1-201ENST00000434304 1623 ntBASIC2.83□□□□□ -1.96
CCDC88AQ3V6T2 RNU6-14P-201ENST00000384630 106 ntBASIC2.83□□□□□ -1.96
CCDC88AQ3V6T2 NPM1P10-201ENST00000398310 865 ntBASIC2.83□□□□□ -1.96
CCDC88AQ3V6T2 RNA5SP498-201ENST00000411342 120 ntBASIC2.83□□□□□ -1.96
CCDC88AQ3V6T2 AL137001.1-201ENST00000450212 199 ntTSL 3 BASIC2.83□□□□□ -1.96
CCDC88AQ3V6T2 AC091917.2-201ENST00000505002 744 ntBASIC2.83□□□□□ -1.96
CCDC88AQ3V6T2 SNX5P1-201ENST00000505757 1041 ntBASIC2.83□□□□□ -1.96
CCDC88AQ3V6T2 AC108120.2-201ENST00000512973 294 ntBASIC2.83□□□□□ -1.96
CCDC88AQ3V6T2 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC2.83□□□□□ -1.96
CCDC88AQ3V6T2 RNU6-826P-201ENST00000516827 104 ntBASIC2.83□□□□□ -1.96
CCDC88AQ3V6T2 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC2.83□□□□□ -1.96
CCDC88AQ3V6T2 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC2.83□□□□□ -1.96
CCDC88AQ3V6T2 MIR4498-201ENST00000577599 66 ntBASIC2.83□□□□□ -1.96
CCDC88AQ3V6T2 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC2.83□□□□□ -1.96
CCDC88AQ3V6T2 AC084373.1-201ENST00000603311 235 ntBASIC2.83□□□□□ -1.96
CCDC88AQ3V6T2 AC092447.7-201ENST00000422212 1621 ntBASIC2.83□□□□□ -1.96
CCDC88AQ3V6T2 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
CCDC88AQ3V6T2 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.82□□□□□ -1.96
CCDC88AQ3V6T2 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.82□□□□□ -1.96
CCDC88AQ3V6T2 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
CCDC88AQ3V6T2 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
CCDC88AQ3V6T2 RNU6-321P-201ENST00000410912 106 ntBASIC2.82□□□□□ -1.96
CCDC88AQ3V6T2 MTCO2P17-201ENST00000424336 677 ntBASIC2.82□□□□□ -1.96
CCDC88AQ3V6T2 AL354710.1-201ENST00000453641 246 ntBASIC2.82□□□□□ -1.96
CCDC88AQ3V6T2 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC2.82□□□□□ -1.96
CCDC88AQ3V6T2 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC2.82□□□□□ -1.96
CCDC88AQ3V6T2 XKRY-201ENST00000510392 1100 ntBASIC2.82□□□□□ -1.96
CCDC88AQ3V6T2 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC2.82□□□□□ -1.96
CCDC88AQ3V6T2 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC2.82□□□□□ -1.96
CCDC88AQ3V6T2 AL627309.6-201ENST00000606857 840 ntBASIC2.82□□□□□ -1.96
CCDC88AQ3V6T2 EFTUD1P2-201ENST00000514817 1603 ntBASIC2.82□□□□□ -1.96
CCDC88AQ3V6T2 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
CCDC88AQ3V6T2 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
CCDC88AQ3V6T2 RNA5SP88-201ENST00000365560 109 ntBASIC2.82□□□□□ -1.96
CCDC88AQ3V6T2 DEFA7P-201ENST00000382676 285 ntBASIC2.82□□□□□ -1.96
CCDC88AQ3V6T2 MT-TP-201ENST00000387461 68 ntBASIC2.82□□□□□ -1.96
CCDC88AQ3V6T2 AL034374.1-201ENST00000406329 351 ntBASIC2.82□□□□□ -1.96
CCDC88AQ3V6T2 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC2.82□□□□□ -1.96
CCDC88AQ3V6T2 AC124916.1-201ENST00000444020 547 ntBASIC2.82□□□□□ -1.96
CCDC88AQ3V6T2 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC2.82□□□□□ -1.96
CCDC88AQ3V6T2 AP000873.1-201ENST00000463987 400 ntBASIC2.82□□□□□ -1.96
CCDC88AQ3V6T2 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC2.82□□□□□ -1.96
CCDC88AQ3V6T2 AP001960.1-201ENST00000506494 658 ntBASIC2.82□□□□□ -1.96
CCDC88AQ3V6T2 SNORA31.15-201ENST00000516771 132 ntBASIC2.82□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 12.6 ms