Protein–RNA interactions for Protein: Q15465

SHH, Sonic hedgehog protein, humanhuman

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHHQ15465 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC3.03□□□□□ -1.92
SHHQ15465 LINC00557-201ENST00000563184 1279 ntBASIC3.03□□□□□ -1.92
SHHQ15465 AC010928.3-201ENST00000587712 541 ntBASIC3.03□□□□□ -1.92
SHHQ15465 BNIP3P40-201ENST00000596017 556 ntBASIC3.03□□□□□ -1.92
SHHQ15465 AL391001.1-201ENST00000602747 715 ntBASIC3.03□□□□□ -1.92
SHHQ15465 AL671309.1-201ENST00000603750 544 ntBASIC3.03□□□□□ -1.92
SHHQ15465 AL163051.2-201ENST00000618976 735 ntBASIC3.03□□□□□ -1.92
SHHQ15465 AL445493.3-201ENST00000619568 477 ntBASIC3.03□□□□□ -1.92
SHHQ15465 AC025034.2-201ENST00000623264 286 ntBASIC3.03□□□□□ -1.92
SHHQ15465 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC3.03□□□□□ -1.92
SHHQ15465 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC3.03□□□□□ -1.92
SHHQ15465 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC3.03□□□□□ -1.92
SHHQ15465 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.03□□□□□ -1.92
SHHQ15465 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
SHHQ15465 AL157700.1-201ENST00000561973 1432 ntBASIC3.02□□□□□ -1.93
SHHQ15465 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.02□□□□□ -1.93
SHHQ15465 AC007496.3-201ENST00000624987 3443 ntBASIC3.02□□□□□ -1.93
SHHQ15465 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
SHHQ15465 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
SHHQ15465 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC3.02□□□□□ -1.93
SHHQ15465 SNORD115-48-201ENST00000364764 76 ntBASIC3.02□□□□□ -1.93
SHHQ15465 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
SHHQ15465 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
SHHQ15465 TAF9BP2-201ENST00000400856 499 ntBASIC3.02□□□□□ -1.93
SHHQ15465 AGR3-202ENST00000402239 563 ntTSL 2 BASIC3.02□□□□□ -1.93
SHHQ15465 ATF1P1-201ENST00000406040 927 ntBASIC3.02□□□□□ -1.93
SHHQ15465 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
SHHQ15465 RN7SKP192-201ENST00000411291 327 ntBASIC3.02□□□□□ -1.93
SHHQ15465 EI24P1-201ENST00000416584 867 ntBASIC3.02□□□□□ -1.93
SHHQ15465 RPS15AP40-201ENST00000419621 391 ntBASIC3.02□□□□□ -1.93
SHHQ15465 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.02□□□□□ -1.93
SHHQ15465 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC3.02□□□□□ -1.93
SHHQ15465 RPS7P5-201ENST00000441482 581 ntBASIC3.02□□□□□ -1.93
SHHQ15465 RPL23AP33-201ENST00000442301 452 ntBASIC3.02□□□□□ -1.93
SHHQ15465 AC104058.1-201ENST00000448028 297 ntBASIC3.02□□□□□ -1.93
SHHQ15465 OR9N1P-202ENST00000494289 481 ntBASIC3.02□□□□□ -1.93
SHHQ15465 AC096725.1-201ENST00000514266 313 ntBASIC3.02□□□□□ -1.93
SHHQ15465 RNA5SP380-201ENST00000517190 98 ntBASIC3.02□□□□□ -1.93
SHHQ15465 AC109329.2-201ENST00000519658 482 ntBASIC3.02□□□□□ -1.93
SHHQ15465 RPL7P20-201ENST00000520308 745 ntBASIC3.02□□□□□ -1.93
SHHQ15465 IGKV3-31-201ENST00000523109 329 ntBASIC3.02□□□□□ -1.93
SHHQ15465 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC3.02□□□□□ -1.93
SHHQ15465 AP001372.4-201ENST00000524889 472 ntBASIC3.02□□□□□ -1.93
SHHQ15465 MTND2P26-201ENST00000528255 1029 ntBASIC3.02□□□□□ -1.93
SHHQ15465 UBTFL10-201ENST00000528532 562 ntBASIC3.02□□□□□ -1.93
SHHQ15465 OR5D17P-201ENST00000531492 978 ntBASIC3.02□□□□□ -1.93
SHHQ15465 CD69-203ENST00000536709 1020 ntTSL 2 BASIC3.02□□□□□ -1.93
SHHQ15465 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC3.02□□□□□ -1.93
SHHQ15465 OR4T1P-201ENST00000554933 911 ntBASIC3.02□□□□□ -1.93
SHHQ15465 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC3.02□□□□□ -1.93
SHHQ15465 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC3.02□□□□□ -1.93
SHHQ15465 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC3.02□□□□□ -1.93
SHHQ15465 BNIP3P31-201ENST00000604515 566 ntBASIC3.02□□□□□ -1.93
SHHQ15465 AC018618.2-201ENST00000604770 446 ntBASIC3.02□□□□□ -1.93
SHHQ15465 AC034229.4-201ENST00000607861 441 ntBASIC3.02□□□□□ -1.93
SHHQ15465 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC3.02□□□□□ -1.93
SHHQ15465 AL356118.1-201ENST00000635272 1078 ntBASIC3.02□□□□□ -1.93
SHHQ15465 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC3.02□□□□□ -1.93
SHHQ15465 MIR4278-201ENST00000636094 69 ntBASIC3.02□□□□□ -1.93
SHHQ15465 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.01□□□□□ -1.93
SHHQ15465 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.01□□□□□ -1.93
SHHQ15465 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.01□□□□□ -1.93
SHHQ15465 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.01□□□□□ -1.93
SHHQ15465 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
SHHQ15465 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC3.01□□□□□ -1.93
SHHQ15465 RNA5SP289-201ENST00000362332 137 ntBASIC3.01□□□□□ -1.93
SHHQ15465 RNU6ATAC3P-201ENST00000387974 126 ntBASIC3.01□□□□□ -1.93
SHHQ15465 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC3.01□□□□□ -1.93
SHHQ15465 HSPE1P26-201ENST00000405341 275 ntBASIC3.01□□□□□ -1.93
SHHQ15465 RNU6ATAC37P-201ENST00000408328 131 ntBASIC3.01□□□□□ -1.93
SHHQ15465 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC3.01□□□□□ -1.93
SHHQ15465 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
SHHQ15465 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC3.01□□□□□ -1.93
SHHQ15465 CKS1BP5-201ENST00000434172 273 ntBASIC3.01□□□□□ -1.93
SHHQ15465 AL512661.1-201ENST00000434586 1253 ntBASIC3.01□□□□□ -1.93
SHHQ15465 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC3.01□□□□□ -1.93
SHHQ15465 MTND1P26-201ENST00000440488 538 ntBASIC3.01□□□□□ -1.93
SHHQ15465 Z77249.1-201ENST00000444622 1175 ntBASIC3.01□□□□□ -1.93
SHHQ15465 AL590399.6-201ENST00000446396 307 ntBASIC3.01□□□□□ -1.93
SHHQ15465 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC3.01□□□□□ -1.93
SHHQ15465 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC3.01□□□□□ -1.93
SHHQ15465 MTATP6P14-201ENST00000455189 673 ntBASIC3.01□□□□□ -1.93
SHHQ15465 RPS27P29-201ENST00000463110 252 ntBASIC3.01□□□□□ -1.93
SHHQ15465 CYCSP20-201ENST00000473154 315 ntBASIC3.01□□□□□ -1.93
SHHQ15465 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC3.01□□□□□ -1.93
SHHQ15465 AC093663.2-201ENST00000484625 313 ntBASIC3.01□□□□□ -1.93
SHHQ15465 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC3.01□□□□□ -1.93
SHHQ15465 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC3.01□□□□□ -1.93
SHHQ15465 TXNP6-201ENST00000510190 310 ntBASIC3.01□□□□□ -1.93
SHHQ15465 AC010265.1-201ENST00000513509 211 ntBASIC3.01□□□□□ -1.93
SHHQ15465 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC3.01□□□□□ -1.93
SHHQ15465 RNU6-548P-201ENST00000517083 115 ntBASIC3.01□□□□□ -1.93
SHHQ15465 SCARNA20.6-201ENST00000517251 106 ntBASIC3.01□□□□□ -1.93
SHHQ15465 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC3.01□□□□□ -1.93
SHHQ15465 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC3.01□□□□□ -1.93
SHHQ15465 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC3.01□□□□□ -1.93
SHHQ15465 AC090616.5-202ENST00000582111 297 ntBASIC3.01□□□□□ -1.93
SHHQ15465 AC245884.10-201ENST00000597355 337 ntBASIC3.01□□□□□ -1.93
SHHQ15465 AC027449.1-201ENST00000608890 407 ntBASIC3.01□□□□□ -1.93
SHHQ15465 AC084824.5-201ENST00000612009 413 ntBASIC3.01□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 97.8 ms