Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC1.93□□□□□ -2.1
TFF3Q07654 MTND5P29-201ENST00000458676 1807 ntBASIC1.93□□□□□ -2.1
TFF3Q07654 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC1.93□□□□□ -2.1
TFF3Q07654 AC005336.3-201ENST00000623833 2679 ntBASIC1.93□□□□□ -2.1
TFF3Q07654 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC1.92□□□□□ -2.1
TFF3Q07654 AC091564.4-201ENST00000533934 2194 ntBASIC1.92□□□□□ -2.1
TFF3Q07654 AC097714.1-201ENST00000511272 1647 ntBASIC1.92□□□□□ -2.1
TFF3Q07654 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC1.92□□□□□ -2.1
TFF3Q07654 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
TFF3Q07654 U8.13-201ENST00000390842 128 ntBASIC1.92□□□□□ -2.1
TFF3Q07654 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
TFF3Q07654 RNU6ATAC16P-201ENST00000408591 138 ntBASIC1.92□□□□□ -2.1
TFF3Q07654 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC1.92□□□□□ -2.1
TFF3Q07654 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC1.92□□□□□ -2.1
TFF3Q07654 RPL19P1-201ENST00000411635 428 ntBASIC1.92□□□□□ -2.1
TFF3Q07654 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC1.92□□□□□ -2.1
TFF3Q07654 AL031736.2-201ENST00000426573 787 ntBASIC1.92□□□□□ -2.1
TFF3Q07654 RPL34P26-201ENST00000445636 354 ntBASIC1.92□□□□□ -2.1
TFF3Q07654 HMGB1P48-201ENST00000446155 598 ntBASIC1.92□□□□□ -2.1
TFF3Q07654 RPL7P12-201ENST00000446719 750 ntBASIC1.92□□□□□ -2.1
TFF3Q07654 NFU1-207ENST00000462320 558 ntTSL 4 BASIC1.92□□□□□ -2.1
TFF3Q07654 CKS1BP2-201ENST00000497342 240 ntBASIC1.92□□□□□ -2.1
TFF3Q07654 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
TFF3Q07654 SCARNA16.3-201ENST00000516595 184 ntBASIC1.92□□□□□ -2.1
TFF3Q07654 OR4R2P-201ENST00000530815 597 ntBASIC1.92□□□□□ -2.1
TFF3Q07654 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC1.92□□□□□ -2.1
TFF3Q07654 AC135628.1-201ENST00000568867 534 ntBASIC1.92□□□□□ -2.1
TFF3Q07654 AC012182.1-201ENST00000570133 895 ntBASIC1.92□□□□□ -2.1
TFF3Q07654 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC1.92□□□□□ -2.1
TFF3Q07654 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC1.92□□□□□ -2.1
TFF3Q07654 KC877982.1-201ENST00000602313 470 ntBASIC1.92□□□□□ -2.1
TFF3Q07654 RPL23AP88-201ENST00000605759 454 ntBASIC1.92□□□□□ -2.1
TFF3Q07654 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC1.92□□□□□ -2.1
TFF3Q07654 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
TFF3Q07654 AC023128.2-201ENST00000420880 1223 ntBASIC1.91□□□□□ -2.1
TFF3Q07654 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC1.91□□□□□ -2.1
TFF3Q07654 HMGB1P15-201ENST00000453854 435 ntBASIC1.91□□□□□ -2.1
TFF3Q07654 AC092754.2-201ENST00000463506 460 ntBASIC1.91□□□□□ -2.1
TFF3Q07654 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC1.91□□□□□ -2.1
TFF3Q07654 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC1.91□□□□□ -2.1
TFF3Q07654 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC1.91□□□□□ -2.1
TFF3Q07654 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC1.91□□□□□ -2.1
TFF3Q07654 RNA5SP458-201ENST00000516188 119 ntBASIC1.91□□□□□ -2.1
TFF3Q07654 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC1.91□□□□□ -2.1
TFF3Q07654 AC009831.4-201ENST00000620744 325 ntBASIC1.91□□□□□ -2.1
TFF3Q07654 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC1.91□□□□□ -2.1
TFF3Q07654 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
TFF3Q07654 USP44-208ENST00000552440 1818 ntTSL 5 BASIC1.91□□□□□ -2.1
TFF3Q07654 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.1
TFF3Q07654 ZNF720P1-201ENST00000562403 1939 ntBASIC1.9□□□□□ -2.11
TFF3Q07654 RNU1-138P-201ENST00000384093 164 ntBASIC1.9□□□□□ -2.11
TFF3Q07654 SNORA26.9-201ENST00000391322 122 ntBASIC1.9□□□□□ -2.11
TFF3Q07654 ATP5F1P6-201ENST00000402768 767 ntBASIC1.9□□□□□ -2.11
TFF3Q07654 AL354719.1-201ENST00000406535 843 ntBASIC1.9□□□□□ -2.11
TFF3Q07654 CYP3A43-205ENST00000415413 990 ntTSL 5 BASIC1.9□□□□□ -2.11
TFF3Q07654 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC1.9□□□□□ -2.11
TFF3Q07654 AL121882.1-201ENST00000422893 417 ntBASIC1.9□□□□□ -2.11
TFF3Q07654 AL445646.1-201ENST00000431784 216 ntBASIC1.9□□□□□ -2.11
TFF3Q07654 AC007677.1-201ENST00000445757 515 ntBASIC1.9□□□□□ -2.11
TFF3Q07654 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC1.9□□□□□ -2.11
TFF3Q07654 RNU6ATAC9P-201ENST00000516210 116 ntBASIC1.9□□□□□ -2.11
TFF3Q07654 Y_RNA.676-201ENST00000516393 96 ntBASIC1.9□□□□□ -2.11
TFF3Q07654 RNU6-295P-201ENST00000516901 104 ntBASIC1.9□□□□□ -2.11
TFF3Q07654 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC1.9□□□□□ -2.11
TFF3Q07654 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC1.9□□□□□ -2.11
TFF3Q07654 MEG8-218ENST00000556720 456 ntTSL 3 BASIC1.9□□□□□ -2.11
TFF3Q07654 AADACP1-206ENST00000561502 1193 ntBASIC1.9□□□□□ -2.11
TFF3Q07654 MIR4446-201ENST00000578505 67 ntBASIC1.9□□□□□ -2.11
TFF3Q07654 AC073387.2-201ENST00000604797 784 ntBASIC1.9□□□□□ -2.11
TFF3Q07654 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
TFF3Q07654 ZNF355P-201ENST00000427301 3216 ntBASIC1.9□□□□□ -2.11
TFF3Q07654 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC1.9□□□□□ -2.11
TFF3Q07654 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC1.9□□□□□ -2.11
TFF3Q07654 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC1.89□□□□□ -2.11
TFF3Q07654 AC010329.2-201ENST00000595195 2737 ntBASIC1.89□□□□□ -2.11
TFF3Q07654 CLECL1-201ENST00000327839 670 ntAPPRIS P3 TSL 1 (best) BASIC1.89□□□□□ -2.11
TFF3Q07654 RPL21P75-201ENST00000396599 483 ntBASIC1.89□□□□□ -2.11
TFF3Q07654 RPL21P28-201ENST00000401418 483 ntBASIC1.89□□□□□ -2.11
TFF3Q07654 AL592114.1-201ENST00000403842 483 ntBASIC1.89□□□□□ -2.11
TFF3Q07654 RNU2-2P-201ENST00000410396 191 ntBASIC1.89□□□□□ -2.11
TFF3Q07654 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC1.89□□□□□ -2.11
TFF3Q07654 ATP5F1P1-201ENST00000433775 569 ntBASIC1.89□□□□□ -2.11
TFF3Q07654 AC004866.2-201ENST00000438285 481 ntBASIC1.89□□□□□ -2.11
TFF3Q07654 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC1.89□□□□□ -2.11
TFF3Q07654 AC093392.2-201ENST00000450682 337 ntBASIC1.89□□□□□ -2.11
TFF3Q07654 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC1.89□□□□□ -2.11
TFF3Q07654 RPL21P39-201ENST00000463605 483 ntBASIC1.89□□□□□ -2.11
TFF3Q07654 AC011979.1-201ENST00000472300 483 ntBASIC1.89□□□□□ -2.11
TFF3Q07654 RPL21P93-201ENST00000480465 489 ntBASIC1.89□□□□□ -2.11
TFF3Q07654 AC233702.1-201ENST00000482905 502 ntBASIC1.89□□□□□ -2.11
TFF3Q07654 AC093591.1-201ENST00000491435 481 ntBASIC1.89□□□□□ -2.11
TFF3Q07654 RPL21P16-201ENST00000495531 483 ntBASIC1.89□□□□□ -2.11
TFF3Q07654 RN7SKP219-201ENST00000516825 296 ntBASIC1.89□□□□□ -2.11
TFF3Q07654 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC1.89□□□□□ -2.11
TFF3Q07654 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC1.89□□□□□ -2.11
TFF3Q07654 AL049779.4-201ENST00000604500 156 ntBASIC1.89□□□□□ -2.11
TFF3Q07654 AC103710.2-201ENST00000609912 942 ntBASIC1.89□□□□□ -2.11
TFF3Q07654 AC103710.1-201ENST00000610003 901 ntBASIC1.89□□□□□ -2.11
TFF3Q07654 AC245517.5-201ENST00000611529 162 ntBASIC1.89□□□□□ -2.11
TFF3Q07654 U2.15-201ENST00000611544 191 ntBASIC1.89□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 125.7 ms