Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC4.96□□□□□ -1.62
RNF4P78317 AC069307.1-201ENST00000602820 447 ntBASIC4.96□□□□□ -1.62
RNF4P78317 AC104662.1-201ENST00000604448 511 ntBASIC4.96□□□□□ -1.62
RNF4P78317 AC244107.2-201ENST00000611773 76 ntBASIC4.96□□□□□ -1.62
RNF4P78317 AL357559.1-201ENST00000622228 274 ntBASIC4.96□□□□□ -1.62
RNF4P78317 AL353662.3-201ENST00000625131 237 ntBASIC4.96□□□□□ -1.62
RNF4P78317 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC4.96□□□□□ -1.62
RNF4P78317 AC083843.3-201ENST00000623679 2186 ntBASIC4.96□□□□□ -1.62
RNF4P78317 IQCB2P-201ENST00000401788 1633 ntBASIC4.96□□□□□ -1.62
RNF4P78317 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC4.96□□□□□ -1.62
RNF4P78317 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.62
RNF4P78317 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC4.96□□□□□ -1.62
RNF4P78317 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC4.96□□□□□ -1.62
RNF4P78317 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
RNF4P78317 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC4.96□□□□□ -1.62
RNF4P78317 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.62
RNF4P78317 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC4.96□□□□□ -1.62
RNF4P78317 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
RNF4P78317 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.95□□□□□ -1.62
RNF4P78317 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
RNF4P78317 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC4.95□□□□□ -1.62
RNF4P78317 TPTE2P4-201ENST00000258589 1605 ntBASIC4.95□□□□□ -1.62
RNF4P78317 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC4.95□□□□□ -1.62
RNF4P78317 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
RNF4P78317 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
RNF4P78317 RN7SKP224-201ENST00000364140 325 ntBASIC4.95□□□□□ -1.62
RNF4P78317 RNU6-639P-201ENST00000384074 107 ntBASIC4.95□□□□□ -1.62
RNF4P78317 RNU6-171P-201ENST00000384354 107 ntBASIC4.95□□□□□ -1.62
RNF4P78317 MIR223-201ENST00000385204 110 ntBASIC4.95□□□□□ -1.62
RNF4P78317 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
RNF4P78317 AL109755.1-201ENST00000401791 649 ntBASIC4.95□□□□□ -1.62
RNF4P78317 RNU4-46P-201ENST00000410818 138 ntBASIC4.95□□□□□ -1.62
RNF4P78317 AL591848.1-201ENST00000413092 322 ntBASIC4.95□□□□□ -1.62
RNF4P78317 RPL30P2-201ENST00000414021 291 ntBASIC4.95□□□□□ -1.62
RNF4P78317 AC092447.6-201ENST00000414578 210 ntBASIC4.95□□□□□ -1.62
RNF4P78317 AC113618.1-201ENST00000416747 285 ntBASIC4.95□□□□□ -1.62
RNF4P78317 RPL12P34-201ENST00000424532 479 ntBASIC4.95□□□□□ -1.62
RNF4P78317 AC108075.1-201ENST00000424692 529 ntBASIC4.95□□□□□ -1.62
RNF4P78317 AC093655.2-201ENST00000425735 631 ntBASIC4.95□□□□□ -1.62
RNF4P78317 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC4.95□□□□□ -1.62
RNF4P78317 AL163193.1-201ENST00000444895 788 ntBASIC4.95□□□□□ -1.62
RNF4P78317 RN7SL172P-201ENST00000460535 303 ntBASIC4.95□□□□□ -1.62
RNF4P78317 AC058823.1-201ENST00000485315 474 ntBASIC4.95□□□□□ -1.62
RNF4P78317 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC4.95□□□□□ -1.62
RNF4P78317 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC4.95□□□□□ -1.62
RNF4P78317 RBBP4P6-201ENST00000508098 202 ntBASIC4.95□□□□□ -1.62
RNF4P78317 IGLV2-28-201ENST00000520681 304 ntBASIC4.95□□□□□ -1.62
RNF4P78317 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC4.95□□□□□ -1.62
RNF4P78317 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC4.95□□□□□ -1.62
RNF4P78317 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC4.95□□□□□ -1.62
RNF4P78317 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC4.95□□□□□ -1.62
RNF4P78317 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC4.95□□□□□ -1.62
RNF4P78317 AL008729.2-201ENST00000606393 473 ntBASIC4.95□□□□□ -1.62
RNF4P78317 AC037198.3-201ENST00000616754 526 ntBASIC4.95□□□□□ -1.62
RNF4P78317 MIR6133-201ENST00000617057 108 ntBASIC4.95□□□□□ -1.62
RNF4P78317 WWOX-217ENST00000620008 450 ntTSL 2 BASIC4.95□□□□□ -1.62
RNF4P78317 AL589994.2-201ENST00000621124 579 ntBASIC4.95□□□□□ -1.62
RNF4P78317 AC055839.1-201ENST00000634467 498 ntBASIC4.95□□□□□ -1.62
RNF4P78317 CYP4F35P-202ENST00000636121 390 ntBASIC4.95□□□□□ -1.62
RNF4P78317 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
RNF4P78317 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
RNF4P78317 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC4.95□□□□□ -1.62
RNF4P78317 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.95□□□□□ -1.62
RNF4P78317 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
RNF4P78317 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC4.95□□□□□ -1.62
RNF4P78317 SAGE4P-201ENST00000442271 3381 ntBASIC4.95□□□□□ -1.62
RNF4P78317 MTND5P16-201ENST00000460269 1703 ntBASIC4.94□□□□□ -1.62
RNF4P78317 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
RNF4P78317 ZNF33CP-201ENST00000432492 2030 ntBASIC4.94□□□□□ -1.62
RNF4P78317 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
RNF4P78317 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
RNF4P78317 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC4.94□□□□□ -1.62
RNF4P78317 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC4.94□□□□□ -1.62
RNF4P78317 Y_RNA.197-201ENST00000364004 102 ntBASIC4.94□□□□□ -1.62
RNF4P78317 MDM4-202ENST00000367180 547 ntTSL 3 BASIC4.94□□□□□ -1.62
RNF4P78317 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC4.94□□□□□ -1.62
RNF4P78317 Y_RNA.395-201ENST00000383945 109 ntBASIC4.94□□□□□ -1.62
RNF4P78317 MIR105-1-201ENST00000385222 81 ntBASIC4.94□□□□□ -1.62
RNF4P78317 AC005522.1-201ENST00000395416 346 ntBASIC4.94□□□□□ -1.62
RNF4P78317 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC4.94□□□□□ -1.62
RNF4P78317 MIR1178-201ENST00000408396 91 ntBASIC4.94□□□□□ -1.62
RNF4P78317 RPL21P24-201ENST00000413752 448 ntBASIC4.94□□□□□ -1.62
RNF4P78317 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC4.94□□□□□ -1.62
RNF4P78317 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC4.94□□□□□ -1.62
RNF4P78317 AL391219.1-201ENST00000422570 483 ntBASIC4.94□□□□□ -1.62
RNF4P78317 PMCHL1-202ENST00000423102 261 ntBASIC4.94□□□□□ -1.62
RNF4P78317 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC4.94□□□□□ -1.62
RNF4P78317 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC4.94□□□□□ -1.62
RNF4P78317 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
RNF4P78317 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC4.94□□□□□ -1.62
RNF4P78317 AC104634.1-201ENST00000452720 462 ntBASIC4.94□□□□□ -1.62
RNF4P78317 AC091685.2-201ENST00000454924 864 ntBASIC4.94□□□□□ -1.62
RNF4P78317 RPL21P93-201ENST00000480465 489 ntBASIC4.94□□□□□ -1.62
RNF4P78317 RN7SL214P-201ENST00000487317 265 ntBASIC4.94□□□□□ -1.62
RNF4P78317 RPL23AP55-201ENST00000498163 452 ntBASIC4.94□□□□□ -1.62
RNF4P78317 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC4.94□□□□□ -1.62
RNF4P78317 AC021146.2-201ENST00000504736 556 ntBASIC4.94□□□□□ -1.62
RNF4P78317 RNA5SP228-201ENST00000516232 133 ntBASIC4.94□□□□□ -1.62
RNF4P78317 RNA5SP454-201ENST00000517231 127 ntBASIC4.94□□□□□ -1.62
RNF4P78317 RNA5SP373-201ENST00000517271 95 ntBASIC4.94□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 116.3 ms