Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXC11O43248 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC4.09□□□□□ -1.75
HOXC11O43248 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC4.09□□□□□ -1.75
HOXC11O43248 VN1R17P-201ENST00000472048 1090 ntBASIC4.09□□□□□ -1.75
HOXC11O43248 RPL30P6-201ENST00000475925 342 ntBASIC4.09□□□□□ -1.75
HOXC11O43248 AC021382.1-201ENST00000483523 359 ntBASIC4.09□□□□□ -1.75
HOXC11O43248 AL024509.2-201ENST00000493462 493 ntBASIC4.09□□□□□ -1.75
HOXC11O43248 AC096751.1-202ENST00000502691 1067 ntBASIC4.09□□□□□ -1.75
HOXC11O43248 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXC11O43248 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXC11O43248 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXC11O43248 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC4.09□□□□□ -1.75
HOXC11O43248 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC4.09□□□□□ -1.75
HOXC11O43248 MIR2114-201ENST00000516645 80 ntBASIC4.09□□□□□ -1.75
HOXC11O43248 RNA5SP179-201ENST00000517284 121 ntBASIC4.09□□□□□ -1.75
HOXC11O43248 IGKV2D-23-201ENST00000518179 286 ntBASIC4.09□□□□□ -1.75
HOXC11O43248 NDUFA5P2-201ENST00000519723 344 ntBASIC4.09□□□□□ -1.75
HOXC11O43248 AC013828.2-201ENST00000532487 235 ntBASIC4.09□□□□□ -1.75
HOXC11O43248 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC4.09□□□□□ -1.75
HOXC11O43248 EMP1-206ENST00000537612 505 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXC11O43248 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXC11O43248 CYCSP30-201ENST00000546447 172 ntBASIC4.09□□□□□ -1.75
HOXC11O43248 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC4.09□□□□□ -1.75
HOXC11O43248 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXC11O43248 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC4.09□□□□□ -1.75
HOXC11O43248 MIR4444-1-201ENST00000581696 74 ntBASIC4.09□□□□□ -1.75
HOXC11O43248 AP001004.1-201ENST00000582468 324 ntBASIC4.09□□□□□ -1.75
HOXC11O43248 MIR4444-2-201ENST00000584390 74 ntBASIC4.09□□□□□ -1.75
HOXC11O43248 AC013444.2-201ENST00000603317 787 ntBASIC4.09□□□□□ -1.75
HOXC11O43248 AC025811.1-201ENST00000604312 472 ntBASIC4.09□□□□□ -1.75
HOXC11O43248 MIR432-201ENST00000606207 94 ntBASIC4.09□□□□□ -1.75
HOXC11O43248 AC092354.2-201ENST00000607786 514 ntBASIC4.09□□□□□ -1.75
HOXC11O43248 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXC11O43248 AL590240.3-201ENST00000621416 943 ntBASIC4.09□□□□□ -1.75
HOXC11O43248 AL360181.4-201ENST00000621752 134 ntBASIC4.09□□□□□ -1.75
HOXC11O43248 AC127502.3-201ENST00000636170 1206 ntBASIC4.09□□□□□ -1.75
HOXC11O43248 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC4.09□□□□□ -1.75
HOXC11O43248 MTND4P16-201ENST00000466108 1367 ntBASIC4.09□□□□□ -1.75
HOXC11O43248 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC4.09□□□□□ -1.75
HOXC11O43248 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC4.09□□□□□ -1.75
HOXC11O43248 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC4.09□□□□□ -1.76
HOXC11O43248 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
HOXC11O43248 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
HOXC11O43248 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC4.09□□□□□ -1.76
HOXC11O43248 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
HOXC11O43248 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC4.08□□□□□ -1.76
HOXC11O43248 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
HOXC11O43248 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
HOXC11O43248 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
HOXC11O43248 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC4.08□□□□□ -1.76
HOXC11O43248 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
HOXC11O43248 RNU6-660P-201ENST00000364566 109 ntBASIC4.08□□□□□ -1.76
HOXC11O43248 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.08□□□□□ -1.76
HOXC11O43248 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
HOXC11O43248 AC007066.1-201ENST00000392902 381 ntBASIC4.08□□□□□ -1.76
HOXC11O43248 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXC11O43248 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC4.08□□□□□ -1.76
HOXC11O43248 AC092647.1-201ENST00000420654 287 ntBASIC4.08□□□□□ -1.76
HOXC11O43248 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC4.08□□□□□ -1.76
HOXC11O43248 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC4.08□□□□□ -1.76
HOXC11O43248 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
HOXC11O43248 UBE2V1P13-201ENST00000436983 439 ntBASIC4.08□□□□□ -1.76
HOXC11O43248 MTND1P26-201ENST00000440488 538 ntBASIC4.08□□□□□ -1.76
HOXC11O43248 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC4.08□□□□□ -1.76
HOXC11O43248 AP000542.1-201ENST00000448473 371 ntBASIC4.08□□□□□ -1.76
HOXC11O43248 AL500522.2-201ENST00000448562 343 ntBASIC4.08□□□□□ -1.76
HOXC11O43248 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXC11O43248 RPL30P9-201ENST00000465586 330 ntBASIC4.08□□□□□ -1.76
HOXC11O43248 SNRPGP3-201ENST00000469405 227 ntBASIC4.08□□□□□ -1.76
HOXC11O43248 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC4.08□□□□□ -1.76
HOXC11O43248 AC021678.1-201ENST00000505195 936 ntBASIC4.08□□□□□ -1.76
HOXC11O43248 AC017037.2-201ENST00000513850 890 ntBASIC4.08□□□□□ -1.76
HOXC11O43248 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXC11O43248 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC4.08□□□□□ -1.76
HOXC11O43248 OSBPL9P5-201ENST00000542581 171 ntBASIC4.08□□□□□ -1.76
HOXC11O43248 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXC11O43248 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXC11O43248 AL360157.1-201ENST00000565962 87 ntBASIC4.08□□□□□ -1.76
HOXC11O43248 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXC11O43248 FAM60BP-201ENST00000578364 658 ntBASIC4.08□□□□□ -1.76
HOXC11O43248 OR4K8P-201ENST00000578842 1048 ntBASIC4.08□□□□□ -1.76
HOXC11O43248 MIR3690-201ENST00000580266 75 ntBASIC4.08□□□□□ -1.76
HOXC11O43248 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC4.08□□□□□ -1.76
HOXC11O43248 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC4.08□□□□□ -1.76
HOXC11O43248 CLIC4P2-201ENST00000601934 717 ntBASIC4.08□□□□□ -1.76
HOXC11O43248 AC091167.4-201ENST00000605079 184 ntBASIC4.08□□□□□ -1.76
HOXC11O43248 AC107214.2-201ENST00000608204 634 ntBASIC4.08□□□□□ -1.76
HOXC11O43248 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC4.08□□□□□ -1.76
HOXC11O43248 AC233309.1-201ENST00000619522 751 ntBASIC4.08□□□□□ -1.76
HOXC11O43248 AC002550.2-201ENST00000621246 394 ntBASIC4.08□□□□□ -1.76
HOXC11O43248 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
HOXC11O43248 AF246928.1-201ENST00000623768 87 ntBASIC4.08□□□□□ -1.76
HOXC11O43248 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC4.08□□□□□ -1.76
HOXC11O43248 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
HOXC11O43248 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
HOXC11O43248 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
HOXC11O43248 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC4.07□□□□□ -1.76
HOXC11O43248 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXC11O43248 AL645937.1-201ENST00000641739 1652 ntBASIC4.07□□□□□ -1.76
HOXC11O43248 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC4.07□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 79.9 ms