Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 AC007991.1-201ENST00000522680 631 ntBASIC5.78□□□□□ -1.48
USP3Q9Y6I4 AP001922.4-201ENST00000526967 290 ntBASIC5.78□□□□□ -1.48
USP3Q9Y6I4 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC5.78□□□□□ -1.48
USP3Q9Y6I4 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC5.78□□□□□ -1.48
USP3Q9Y6I4 AC007375.1-201ENST00000554513 578 ntBASIC5.78□□□□□ -1.48
USP3Q9Y6I4 AC007225.2-201ENST00000562529 256 ntBASIC5.78□□□□□ -1.48
USP3Q9Y6I4 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC5.78□□□□□ -1.48
USP3Q9Y6I4 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC5.78□□□□□ -1.48
USP3Q9Y6I4 AC011494.1-201ENST00000596454 237 ntBASIC5.78□□□□□ -1.48
USP3Q9Y6I4 AL355812.1-201ENST00000603215 216 ntBASIC5.78□□□□□ -1.48
USP3Q9Y6I4 AC006254.3-201ENST00000603353 884 ntBASIC5.78□□□□□ -1.48
USP3Q9Y6I4 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
USP3Q9Y6I4 ALG13-230ENST00000623189 458 ntTSL 3 BASIC5.78□□□□□ -1.48
USP3Q9Y6I4 AC138627.2-201ENST00000624202 601 ntBASIC5.78□□□□□ -1.48
USP3Q9Y6I4 NEK3-211ENST00000629912 141 ntTSL 5 BASIC5.78□□□□□ -1.48
USP3Q9Y6I4 U6.104-201ENST00000637979 90 ntBASIC5.78□□□□□ -1.48
USP3Q9Y6I4 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
USP3Q9Y6I4 LGALSL-202ENST00000409537 3298 ntTSL 5 BASIC5.78□□□□□ -1.48
USP3Q9Y6I4 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC5.78□□□□□ -1.48
USP3Q9Y6I4 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
USP3Q9Y6I4 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
USP3Q9Y6I4 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC5.77□□□□□ -1.48
USP3Q9Y6I4 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
USP3Q9Y6I4 ALB-209ENST00000503124 1741 ntTSL 5 BASIC5.77□□□□□ -1.49
USP3Q9Y6I4 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
USP3Q9Y6I4 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC5.77□□□□□ -1.49
USP3Q9Y6I4 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
USP3Q9Y6I4 AL591135.1-201ENST00000401578 5914 ntBASIC5.77□□□□□ -1.49
USP3Q9Y6I4 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
USP3Q9Y6I4 RNA5SP183-201ENST00000362452 119 ntBASIC5.77□□□□□ -1.49
USP3Q9Y6I4 Y_RNA.276-201ENST00000364732 109 ntBASIC5.77□□□□□ -1.49
USP3Q9Y6I4 RNU6-1062P-201ENST00000383908 107 ntBASIC5.77□□□□□ -1.49
USP3Q9Y6I4 AC009804.1-201ENST00000400949 179 ntBASIC5.77□□□□□ -1.49
USP3Q9Y6I4 MIR1252-201ENST00000408861 65 ntBASIC5.77□□□□□ -1.49
USP3Q9Y6I4 RNU2-21P-201ENST00000410368 188 ntBASIC5.77□□□□□ -1.49
USP3Q9Y6I4 RNU4-65P-201ENST00000410473 140 ntBASIC5.77□□□□□ -1.49
USP3Q9Y6I4 AL354868.1-201ENST00000417077 482 ntBASIC5.77□□□□□ -1.49
USP3Q9Y6I4 RPL21P109-201ENST00000422213 475 ntBASIC5.77□□□□□ -1.49
USP3Q9Y6I4 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC5.77□□□□□ -1.49
USP3Q9Y6I4 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC5.77□□□□□ -1.49
USP3Q9Y6I4 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC5.77□□□□□ -1.49
USP3Q9Y6I4 AL645568.3-201ENST00000433683 316 ntBASIC5.77□□□□□ -1.49
USP3Q9Y6I4 MRPS18BP2-201ENST00000434310 759 ntBASIC5.77□□□□□ -1.49
USP3Q9Y6I4 CYCSP12-201ENST00000437729 300 ntBASIC5.77□□□□□ -1.49
USP3Q9Y6I4 AC073910.1-201ENST00000445047 438 ntBASIC5.77□□□□□ -1.49
USP3Q9Y6I4 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC5.77□□□□□ -1.49
USP3Q9Y6I4 AL133445.1-201ENST00000467051 452 ntBASIC5.77□□□□□ -1.49
USP3Q9Y6I4 RN7SL51P-201ENST00000468230 285 ntBASIC5.77□□□□□ -1.49
USP3Q9Y6I4 RPS26P39-201ENST00000469206 341 ntBASIC5.77□□□□□ -1.49
USP3Q9Y6I4 AC006499.3-201ENST00000506077 748 ntBASIC5.77□□□□□ -1.49
USP3Q9Y6I4 TBCAP3-201ENST00000512475 312 ntBASIC5.77□□□□□ -1.49
USP3Q9Y6I4 RNU4-77P-201ENST00000516692 156 ntBASIC5.77□□□□□ -1.49
USP3Q9Y6I4 AC091987.1-201ENST00000517758 464 ntTSL 3 BASIC5.77□□□□□ -1.49
USP3Q9Y6I4 AC131281.1-201ENST00000522984 164 ntBASIC5.77□□□□□ -1.49
USP3Q9Y6I4 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
USP3Q9Y6I4 SUB1P3-201ENST00000564581 315 ntBASIC5.77□□□□□ -1.49
USP3Q9Y6I4 GMFG-212ENST00000602185 423 ntTSL 3 BASIC5.77□□□□□ -1.49
USP3Q9Y6I4 AC123786.2-201ENST00000603459 275 ntBASIC5.77□□□□□ -1.49
USP3Q9Y6I4 AL670379.4-201ENST00000605279 254 ntBASIC5.77□□□□□ -1.49
USP3Q9Y6I4 AL161423.1-201ENST00000613700 262 ntBASIC5.77□□□□□ -1.49
USP3Q9Y6I4 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
USP3Q9Y6I4 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
USP3Q9Y6I4 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
USP3Q9Y6I4 AC091812.1-201ENST00000432235 1948 ntBASIC5.77□□□□□ -1.49
USP3Q9Y6I4 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
USP3Q9Y6I4 AC032011.1-201ENST00000611703 1549 ntBASIC5.77□□□□□ -1.49
USP3Q9Y6I4 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC5.77□□□□□ -1.49
USP3Q9Y6I4 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC5.77□□□□□ -1.49
USP3Q9Y6I4 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC5.77□□□□□ -1.49
USP3Q9Y6I4 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC5.77□□□□□ -1.49
USP3Q9Y6I4 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
USP3Q9Y6I4 AP000432.2-201ENST00000624164 2048 ntBASIC5.77□□□□□ -1.49
USP3Q9Y6I4 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC5.77□□□□□ -1.49
USP3Q9Y6I4 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC5.77□□□□□ -1.49
USP3Q9Y6I4 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
USP3Q9Y6I4 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC5.77□□□□□ -1.49
USP3Q9Y6I4 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC5.77□□□□□ -1.49
USP3Q9Y6I4 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
USP3Q9Y6I4 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
USP3Q9Y6I4 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
USP3Q9Y6I4 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC5.76□□□□□ -1.49
USP3Q9Y6I4 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC5.76□□□□□ -1.49
USP3Q9Y6I4 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
USP3Q9Y6I4 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC5.76□□□□□ -1.49
USP3Q9Y6I4 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC5.76□□□□□ -1.49
USP3Q9Y6I4 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
USP3Q9Y6I4 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
USP3Q9Y6I4 Y_RNA.350-201ENST00000365409 98 ntBASIC5.76□□□□□ -1.49
USP3Q9Y6I4 AL590632.1-201ENST00000424289 371 ntBASIC5.76□□□□□ -1.49
USP3Q9Y6I4 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC5.76□□□□□ -1.49
USP3Q9Y6I4 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
USP3Q9Y6I4 RPL23AP50-201ENST00000434149 455 ntBASIC5.76□□□□□ -1.49
USP3Q9Y6I4 MTND2P29-201ENST00000438595 412 ntBASIC5.76□□□□□ -1.49
USP3Q9Y6I4 RPL23AP33-201ENST00000442301 452 ntBASIC5.76□□□□□ -1.49
USP3Q9Y6I4 NOTCH2P1-201ENST00000443481 624 ntBASIC5.76□□□□□ -1.49
USP3Q9Y6I4 HSFY6P-201ENST00000445573 403 ntBASIC5.76□□□□□ -1.49
USP3Q9Y6I4 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC5.76□□□□□ -1.49
USP3Q9Y6I4 AC105399.1-202ENST00000447303 205 ntBASIC5.76□□□□□ -1.49
USP3Q9Y6I4 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC5.76□□□□□ -1.49
USP3Q9Y6I4 AC243772.1-201ENST00000451620 410 ntBASIC5.76□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 127.2 ms