Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC39Q9UFE4 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC5.61□□□□□ -1.51
CCDC39Q9UFE4 RPS3AP52-201ENST00000435639 297 ntBASIC5.61□□□□□ -1.51
CCDC39Q9UFE4 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC5.61□□□□□ -1.51
CCDC39Q9UFE4 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
CCDC39Q9UFE4 RPL10P17-201ENST00000453852 316 ntBASIC5.61□□□□□ -1.51
CCDC39Q9UFE4 AC097493.1-201ENST00000463958 372 ntBASIC5.61□□□□□ -1.51
CCDC39Q9UFE4 RN7SL515P-201ENST00000463999 297 ntBASIC5.61□□□□□ -1.51
CCDC39Q9UFE4 RN7SKP40-201ENST00000517211 242 ntBASIC5.61□□□□□ -1.51
CCDC39Q9UFE4 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC5.61□□□□□ -1.51
CCDC39Q9UFE4 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC5.61□□□□□ -1.51
CCDC39Q9UFE4 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC5.61□□□□□ -1.51
CCDC39Q9UFE4 SUB1P1-201ENST00000524415 382 ntBASIC5.61□□□□□ -1.51
CCDC39Q9UFE4 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC5.61□□□□□ -1.51
CCDC39Q9UFE4 PTP4A1P6-201ENST00000531034 478 ntBASIC5.61□□□□□ -1.51
CCDC39Q9UFE4 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC5.61□□□□□ -1.51
CCDC39Q9UFE4 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC5.61□□□□□ -1.51
CCDC39Q9UFE4 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC5.61□□□□□ -1.51
CCDC39Q9UFE4 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC5.61□□□□□ -1.51
CCDC39Q9UFE4 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC5.61□□□□□ -1.51
CCDC39Q9UFE4 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC5.61□□□□□ -1.51
CCDC39Q9UFE4 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC5.61□□□□□ -1.51
CCDC39Q9UFE4 AC008782.1-201ENST00000603386 430 ntBASIC5.61□□□□□ -1.51
CCDC39Q9UFE4 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC5.61□□□□□ -1.51
CCDC39Q9UFE4 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC5.61□□□□□ -1.51
CCDC39Q9UFE4 AL049794.2-201ENST00000616301 365 ntBASIC5.61□□□□□ -1.51
CCDC39Q9UFE4 MIR6729-201ENST00000618194 65 ntBASIC5.61□□□□□ -1.51
CCDC39Q9UFE4 AC009318.4-201ENST00000620496 486 ntBASIC5.61□□□□□ -1.51
CCDC39Q9UFE4 CASC19-204ENST00000641001 2055 ntBASIC5.61□□□□□ -1.51
CCDC39Q9UFE4 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
CCDC39Q9UFE4 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC5.61□□□□□ -1.51
CCDC39Q9UFE4 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 AC092079.1-201ENST00000558620 1985 ntBASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 ERCC6-202ENST00000374127 1782 ntBASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 VDAC3-201ENST00000022615 1355 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 ACTR3BP2-202ENST00000623630 1338 ntBASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 OR1S2-201ENST00000302592 978 ntBASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 SNORA51.1-201ENST00000363243 140 ntBASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 RNA5SP455-201ENST00000365190 119 ntBASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 RNU6-831P-201ENST00000384548 107 ntBASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 MTCYBP4-201ENST00000401524 249 ntBASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 HDGFP1-201ENST00000405943 252 ntBASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 RN7SKP266-201ENST00000410232 287 ntBASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 AC234782.4-201ENST00000417646 1048 ntBASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 HSPE1P1-201ENST00000421494 318 ntBASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 AL049734.2-201ENST00000441066 616 ntBASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 AL589765.3-201ENST00000446084 462 ntBASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 RPL31P44-201ENST00000447680 377 ntBASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 RPS17P2-201ENST00000461663 408 ntBASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 RPL23AP12-201ENST00000467573 473 ntBASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 AC078785.3-201ENST00000476607 425 ntBASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 AC233702.1-201ENST00000482905 502 ntBASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 AC104687.1-201ENST00000485829 412 ntBASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 RPS4XP18-201ENST00000495480 763 ntBASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 RNA5SP92-201ENST00000516437 110 ntBASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 RNA5SP43-201ENST00000516559 110 ntBASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 IGLVVI-25-1-201ENST00000521893 249 ntBASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 AP000889.2-201ENST00000532684 490 ntBASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 ATP5J2P6-201ENST00000565203 266 ntBASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 APOOP1-201ENST00000604695 592 ntBASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 AL390240.1-201ENST00000612950 384 ntBASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 MIR6862-1-201ENST00000613016 70 ntBASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 MIR6862-2-201ENST00000614755 70 ntBASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 RMST_9.1-201ENST00000619945 193 ntBASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 AC019206.1-201ENST00000621938 425 ntBASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 BBX-203ENST00000402543 3980 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 AC005332.5-201ENST00000591222 2919 ntBASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC39Q9UFE4 ASNSP1-204ENST00000641977 1664 ntBASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC5.59□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 146.9 ms