Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 TUG1_1.1-201ENST00000610654 145 ntBASIC3.29□□□□□ -1.88
ZNF540Q8NDQ6 CYCSP41-201ENST00000616920 296 ntBASIC3.29□□□□□ -1.88
ZNF540Q8NDQ6 AC039056.2-201ENST00000622261 511 ntBASIC3.29□□□□□ -1.88
ZNF540Q8NDQ6 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.29□□□□□ -1.88
ZNF540Q8NDQ6 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.29□□□□□ -1.88
ZNF540Q8NDQ6 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
ZNF540Q8NDQ6 TPTE2P4-201ENST00000258589 1605 ntBASIC3.29□□□□□ -1.88
ZNF540Q8NDQ6 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
ZNF540Q8NDQ6 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
ZNF540Q8NDQ6 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.28□□□□□ -1.88
ZNF540Q8NDQ6 SUCLA2P2-201ENST00000417269 1309 ntBASIC3.28□□□□□ -1.88
ZNF540Q8NDQ6 RNU6-236P-201ENST00000363886 106 ntBASIC3.28□□□□□ -1.88
ZNF540Q8NDQ6 RNU6-805P-201ENST00000365643 106 ntBASIC3.28□□□□□ -1.88
ZNF540Q8NDQ6 RNU6-657P-201ENST00000383904 107 ntBASIC3.28□□□□□ -1.88
ZNF540Q8NDQ6 RNA5SP252-201ENST00000391131 119 ntBASIC3.28□□□□□ -1.88
ZNF540Q8NDQ6 RPL7P27-201ENST00000403775 720 ntBASIC3.28□□□□□ -1.88
ZNF540Q8NDQ6 RNA5SP107-201ENST00000411358 122 ntBASIC3.28□□□□□ -1.88
ZNF540Q8NDQ6 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.28□□□□□ -1.88
ZNF540Q8NDQ6 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
ZNF540Q8NDQ6 AC019178.2-201ENST00000423595 505 ntBASIC3.28□□□□□ -1.88
ZNF540Q8NDQ6 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.28□□□□□ -1.88
ZNF540Q8NDQ6 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC3.28□□□□□ -1.88
ZNF540Q8NDQ6 AL591419.1-201ENST00000427423 339 ntBASIC3.28□□□□□ -1.88
ZNF540Q8NDQ6 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC3.28□□□□□ -1.88
ZNF540Q8NDQ6 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC3.28□□□□□ -1.88
ZNF540Q8NDQ6 SETD6P1-201ENST00000444575 317 ntBASIC3.28□□□□□ -1.88
ZNF540Q8NDQ6 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC3.28□□□□□ -1.88
ZNF540Q8NDQ6 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC3.28□□□□□ -1.88
ZNF540Q8NDQ6 AL592447.1-201ENST00000447592 540 ntBASIC3.28□□□□□ -1.88
ZNF540Q8NDQ6 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC3.28□□□□□ -1.88
ZNF540Q8NDQ6 RPS26P21-201ENST00000475397 348 ntBASIC3.28□□□□□ -1.88
ZNF540Q8NDQ6 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC3.28□□□□□ -1.88
ZNF540Q8NDQ6 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.28□□□□□ -1.88
ZNF540Q8NDQ6 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.28□□□□□ -1.88
ZNF540Q8NDQ6 DUXAP2-201ENST00000519198 589 ntBASIC3.28□□□□□ -1.88
ZNF540Q8NDQ6 OR4R2P-201ENST00000530815 597 ntBASIC3.28□□□□□ -1.88
ZNF540Q8NDQ6 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC3.28□□□□□ -1.88
ZNF540Q8NDQ6 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC3.28□□□□□ -1.88
ZNF540Q8NDQ6 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC3.28□□□□□ -1.88
ZNF540Q8NDQ6 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC3.28□□□□□ -1.88
ZNF540Q8NDQ6 AC034268.2-201ENST00000571784 482 ntBASIC3.28□□□□□ -1.88
ZNF540Q8NDQ6 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.28□□□□□ -1.88
ZNF540Q8NDQ6 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC3.28□□□□□ -1.88
ZNF540Q8NDQ6 AC096947.1-201ENST00000603233 470 ntBASIC3.28□□□□□ -1.88
ZNF540Q8NDQ6 AC144521.1-201ENST00000607148 956 ntBASIC3.28□□□□□ -1.88
ZNF540Q8NDQ6 AC092354.2-201ENST00000607786 514 ntBASIC3.28□□□□□ -1.88
ZNF540Q8NDQ6 FP236240.3-201ENST00000623061 327 ntBASIC3.28□□□□□ -1.88
ZNF540Q8NDQ6 AL732618.1-201ENST00000623251 301 ntBASIC3.28□□□□□ -1.88
ZNF540Q8NDQ6 AC110801.1-201ENST00000623590 212 ntBASIC3.28□□□□□ -1.88
ZNF540Q8NDQ6 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC3.28□□□□□ -1.88
ZNF540Q8NDQ6 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC3.28□□□□□ -1.88
ZNF540Q8NDQ6 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 FAM35BP-202ENST00000497389 3337 ntBASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 CD36-221ENST00000534394 1741 ntTSL 2 BASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 SNORA73.2-201ENST00000364946 201 ntBASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 MIR23A-201ENST00000385245 73 ntBASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 RNA5SP44-201ENST00000410446 133 ntBASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 RNA5SP31-201ENST00000411144 127 ntBASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 AC093578.1-201ENST00000415219 368 ntBASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 OFD1P11Y-201ENST00000418213 1177 ntBASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 RAC1P7-201ENST00000445367 377 ntBASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 MTCYBP11-201ENST00000447254 1109 ntBASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 AC010655.1-201ENST00000449336 292 ntBASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 PDSS1P2-201ENST00000449397 678 ntBASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 NAA50-206ENST00000493454 964 ntTSL 2 BASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 AC021146.5-201ENST00000503544 545 ntBASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 AC006445.2-201ENST00000510061 472 ntBASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 TXNP6-201ENST00000510190 310 ntBASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 AC112206.4-201ENST00000515142 405 ntBASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 AP001207.2-201ENST00000519490 539 ntBASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 OR5AK1P-201ENST00000524837 922 ntBASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 AC006518.1-201ENST00000541449 943 ntBASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 AC015688.2-201ENST00000584523 262 ntBASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 AC005776.1-201ENST00000603164 290 ntBASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 AC024220.1-201ENST00000603675 484 ntBASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 AC080013.4-201ENST00000607624 649 ntBASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 AC107294.3-201ENST00000609211 526 ntBASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 AP000254.1-201ENST00000609934 520 ntBASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 AC084757.4-201ENST00000616350 526 ntBASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 AC011330.2-201ENST00000621680 635 ntBASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 AL357559.1-201ENST00000622228 274 ntBASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 AL157770.1-201ENST00000623049 439 ntBASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 CRYM-AS1-204ENST00000637983 556 ntBASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 79.4 ms