Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC2.93□□□□□ -1.94
USP54Q70EL1 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC2.93□□□□□ -1.94
USP54Q70EL1 MTCYBP28-201ENST00000566728 1132 ntBASIC2.93□□□□□ -1.94
USP54Q70EL1 AL160237.3-201ENST00000604114 1013 ntBASIC2.93□□□□□ -1.94
USP54Q70EL1 AL353997.5-201ENST00000618886 171 ntBASIC2.93□□□□□ -1.94
USP54Q70EL1 AC010378.1-201ENST00000619270 362 ntBASIC2.93□□□□□ -1.94
USP54Q70EL1 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC2.93□□□□□ -1.94
USP54Q70EL1 AC084035.1-201ENST00000634543 607 ntBASIC2.93□□□□□ -1.94
USP54Q70EL1 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC2.93□□□□□ -1.94
USP54Q70EL1 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC2.93□□□□□ -1.94
USP54Q70EL1 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC2.92□□□□□ -1.94
USP54Q70EL1 OR5H15-201ENST00000383696 930 ntBASIC2.92□□□□□ -1.94
USP54Q70EL1 TRAPPC2P10-201ENST00000415662 323 ntBASIC2.92□□□□□ -1.94
USP54Q70EL1 SEC63P1-201ENST00000425785 1258 ntBASIC2.92□□□□□ -1.94
USP54Q70EL1 AL035551.1-201ENST00000446931 348 ntBASIC2.92□□□□□ -1.94
USP54Q70EL1 VN1R48P-201ENST00000448149 1036 ntBASIC2.92□□□□□ -1.94
USP54Q70EL1 AP000926.1-201ENST00000479573 241 ntBASIC2.92□□□□□ -1.94
USP54Q70EL1 RAD51AP1P1-201ENST00000484195 1001 ntBASIC2.92□□□□□ -1.94
USP54Q70EL1 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC2.92□□□□□ -1.94
USP54Q70EL1 FAM92A1P2-202ENST00000504766 877 ntBASIC2.92□□□□□ -1.94
USP54Q70EL1 AC007536.1-201ENST00000533382 349 ntBASIC2.92□□□□□ -1.94
USP54Q70EL1 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC2.92□□□□□ -1.94
USP54Q70EL1 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC2.92□□□□□ -1.94
USP54Q70EL1 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC2.92□□□□□ -1.94
USP54Q70EL1 AC004241.3-201ENST00000611728 517 ntBASIC2.92□□□□□ -1.94
USP54Q70EL1 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC2.92□□□□□ -1.94
USP54Q70EL1 CYP3A51P-201ENST00000633513 256 ntBASIC2.92□□□□□ -1.94
USP54Q70EL1 MIR219B-201ENST00000637023 88 ntBASIC2.92□□□□□ -1.94
USP54Q70EL1 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
USP54Q70EL1 GABPAP-201ENST00000419271 1356 ntBASIC2.92□□□□□ -1.94
USP54Q70EL1 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC2.92□□□□□ -1.94
USP54Q70EL1 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC2.92□□□□□ -1.94
USP54Q70EL1 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
USP54Q70EL1 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
USP54Q70EL1 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC2.92□□□□□ -1.94
USP54Q70EL1 AL512646.1-201ENST00000269395 1077 ntBASIC2.92□□□□□ -1.94
USP54Q70EL1 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
USP54Q70EL1 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
USP54Q70EL1 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC2.92□□□□□ -1.94
USP54Q70EL1 NPM1P49-201ENST00000448027 714 ntBASIC2.92□□□□□ -1.94
USP54Q70EL1 AP000926.3-201ENST00000497201 299 ntBASIC2.92□□□□□ -1.94
USP54Q70EL1 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC2.92□□□□□ -1.94
USP54Q70EL1 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC2.92□□□□□ -1.94
USP54Q70EL1 AC068446.3-201ENST00000555285 382 ntBASIC2.92□□□□□ -1.94
USP54Q70EL1 AC023043.3-201ENST00000593113 385 ntBASIC2.92□□□□□ -1.94
USP54Q70EL1 AC090953.1-201ENST00000604305 1092 ntBASIC2.92□□□□□ -1.94
USP54Q70EL1 AL451074.6-201ENST00000608512 729 ntBASIC2.92□□□□□ -1.94
USP54Q70EL1 AC009452.1-201ENST00000640823 606 ntBASIC2.92□□□□□ -1.94
USP54Q70EL1 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.91□□□□□ -1.94
USP54Q70EL1 CLECL1-201ENST00000327839 670 ntAPPRIS P3 TSL 1 (best) BASIC2.91□□□□□ -1.94
USP54Q70EL1 RNU1-91P-201ENST00000364746 163 ntBASIC2.91□□□□□ -1.94
USP54Q70EL1 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
USP54Q70EL1 RNU6-603P-201ENST00000411403 107 ntBASIC2.91□□□□□ -1.94
USP54Q70EL1 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC2.91□□□□□ -1.94
USP54Q70EL1 ELOCP10-201ENST00000440624 327 ntBASIC2.91□□□□□ -1.94
USP54Q70EL1 OR4R2P-201ENST00000530815 597 ntBASIC2.91□□□□□ -1.94
USP54Q70EL1 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC2.91□□□□□ -1.94
USP54Q70EL1 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC2.91□□□□□ -1.94
USP54Q70EL1 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC2.91□□□□□ -1.94
USP54Q70EL1 ELOCP34-201ENST00000604436 327 ntBASIC2.91□□□□□ -1.94
USP54Q70EL1 AC010809.3-201ENST00000621310 641 ntBASIC2.91□□□□□ -1.94
USP54Q70EL1 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC2.91□□□□□ -1.94
USP54Q70EL1 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.91□□□□□ -1.94
USP54Q70EL1 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC2.9□□□□□ -1.94
USP54Q70EL1 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC2.9□□□□□ -1.95
USP54Q70EL1 AC099336.2-201ENST00000422457 254 ntBASIC2.9□□□□□ -1.95
USP54Q70EL1 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC2.9□□□□□ -1.95
USP54Q70EL1 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC2.9□□□□□ -1.95
USP54Q70EL1 VPS8-228ENST00000628962 207 ntTSL 5 BASIC2.9□□□□□ -1.95
USP54Q70EL1 NSRP1P1-201ENST00000444067 1693 ntBASIC2.9□□□□□ -1.95
USP54Q70EL1 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC2.9□□□□□ -1.95
USP54Q70EL1 AL592437.2-201ENST00000421655 2434 ntBASIC2.89□□□□□ -1.95
USP54Q70EL1 HAUS1P1-201ENST00000505275 832 ntBASIC2.89□□□□□ -1.95
USP54Q70EL1 HSPE1P18-201ENST00000517602 280 ntBASIC2.89□□□□□ -1.95
USP54Q70EL1 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC2.89□□□□□ -1.95
USP54Q70EL1 MTND5P21-201ENST00000531961 522 ntBASIC2.89□□□□□ -1.95
USP54Q70EL1 AK6P1-201ENST00000540219 478 ntBASIC2.89□□□□□ -1.95
USP54Q70EL1 MIR4498-201ENST00000577599 66 ntBASIC2.89□□□□□ -1.95
USP54Q70EL1 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC2.89□□□□□ -1.95
USP54Q70EL1 CU459211.1-201ENST00000635667 749 ntBASIC2.89□□□□□ -1.95
USP54Q70EL1 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC2.89□□□□□ -1.95
USP54Q70EL1 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC2.89□□□□□ -1.95
USP54Q70EL1 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC2.89□□□□□ -1.95
USP54Q70EL1 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.89□□□□□ -1.95
USP54Q70EL1 Y_RNA.164-201ENST00000363709 102 ntBASIC2.88□□□□□ -1.95
USP54Q70EL1 SAR1AP2-201ENST00000392696 594 ntBASIC2.88□□□□□ -1.95
USP54Q70EL1 AC022022.1-201ENST00000430304 178 ntBASIC2.88□□□□□ -1.95
USP54Q70EL1 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC2.88□□□□□ -1.95
USP54Q70EL1 AL118520.1-201ENST00000450770 291 ntBASIC2.88□□□□□ -1.95
USP54Q70EL1 RPL23AP42-201ENST00000471152 471 ntBASIC2.88□□□□□ -1.95
USP54Q70EL1 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC2.88□□□□□ -1.95
USP54Q70EL1 U6.98-201ENST00000637157 84 ntBASIC2.88□□□□□ -1.95
USP54Q70EL1 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.88□□□□□ -1.95
USP54Q70EL1 AC025125.1-201ENST00000624743 1922 ntBASIC2.88□□□□□ -1.95
USP54Q70EL1 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.88□□□□□ -1.95
USP54Q70EL1 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC2.88□□□□□ -1.95
USP54Q70EL1 CUL4AP1-201ENST00000514750 1863 ntBASIC2.88□□□□□ -1.95
USP54Q70EL1 AC010680.1-201ENST00000590024 3590 ntBASIC2.88□□□□□ -1.95
USP54Q70EL1 AL356292.1-201ENST00000283110 373 ntBASIC2.88□□□□□ -1.95
USP54Q70EL1 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC2.88□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms