Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SNORA48.2-201ENST00000390926 124 ntBASIC3.92□□□□□ -1.78
COL28A1Q2UY09 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC3.92□□□□□ -1.78
COL28A1Q2UY09 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
COL28A1Q2UY09 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC3.92□□□□□ -1.78
COL28A1Q2UY09 MAP1LC3BP1-201ENST00000417653 379 ntBASIC3.92□□□□□ -1.78
COL28A1Q2UY09 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC3.92□□□□□ -1.78
COL28A1Q2UY09 LAMTOR3P1-201ENST00000428620 370 ntBASIC3.92□□□□□ -1.78
COL28A1Q2UY09 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC3.92□□□□□ -1.78
COL28A1Q2UY09 AL512649.1-201ENST00000428997 581 ntBASIC3.92□□□□□ -1.78
COL28A1Q2UY09 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC3.92□□□□□ -1.78
COL28A1Q2UY09 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC3.92□□□□□ -1.78
COL28A1Q2UY09 MRPS18BP2-201ENST00000434310 759 ntBASIC3.92□□□□□ -1.78
COL28A1Q2UY09 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC3.92□□□□□ -1.78
COL28A1Q2UY09 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC3.92□□□□□ -1.78
COL28A1Q2UY09 BX322784.1-201ENST00000455793 1077 ntBASIC3.92□□□□□ -1.78
COL28A1Q2UY09 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC3.92□□□□□ -1.78
COL28A1Q2UY09 AC104563.1-201ENST00000476147 376 ntBASIC3.92□□□□□ -1.78
COL28A1Q2UY09 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
COL28A1Q2UY09 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC3.92□□□□□ -1.78
COL28A1Q2UY09 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.92□□□□□ -1.78
COL28A1Q2UY09 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.92□□□□□ -1.78
COL28A1Q2UY09 AC093677.1-201ENST00000514414 678 ntBASIC3.92□□□□□ -1.78
COL28A1Q2UY09 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC3.92□□□□□ -1.78
COL28A1Q2UY09 PHBP17-201ENST00000528576 541 ntBASIC3.92□□□□□ -1.78
COL28A1Q2UY09 AL139174.1-201ENST00000531489 886 ntBASIC3.92□□□□□ -1.78
COL28A1Q2UY09 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC3.92□□□□□ -1.78
COL28A1Q2UY09 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC3.92□□□□□ -1.78
COL28A1Q2UY09 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC3.92□□□□□ -1.78
COL28A1Q2UY09 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC3.92□□□□□ -1.78
COL28A1Q2UY09 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC3.92□□□□□ -1.78
COL28A1Q2UY09 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC3.92□□□□□ -1.78
COL28A1Q2UY09 MIR3915-201ENST00000578518 97 ntBASIC3.92□□□□□ -1.78
COL28A1Q2UY09 AP001004.1-201ENST00000582468 324 ntBASIC3.92□□□□□ -1.78
COL28A1Q2UY09 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC3.92□□□□□ -1.78
COL28A1Q2UY09 AC106028.5-201ENST00000610332 395 ntBASIC3.92□□□□□ -1.78
COL28A1Q2UY09 AC006329.2-201ENST00000611491 394 ntBASIC3.92□□□□□ -1.78
COL28A1Q2UY09 AL596245.1-201ENST00000618994 362 ntBASIC3.92□□□□□ -1.78
COL28A1Q2UY09 AC019278.1-201ENST00000623516 479 ntBASIC3.92□□□□□ -1.78
COL28A1Q2UY09 AL356596.1-201ENST00000624230 379 ntBASIC3.92□□□□□ -1.78
COL28A1Q2UY09 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC3.92□□□□□ -1.78
COL28A1Q2UY09 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
COL28A1Q2UY09 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC3.92□□□□□ -1.78
COL28A1Q2UY09 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
COL28A1Q2UY09 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC3.92□□□□□ -1.78
COL28A1Q2UY09 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC3.92□□□□□ -1.78
COL28A1Q2UY09 FAM35DP-201ENST00000323387 2712 ntBASIC3.92□□□□□ -1.78
COL28A1Q2UY09 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
COL28A1Q2UY09 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
COL28A1Q2UY09 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
COL28A1Q2UY09 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.91□□□□□ -1.78
COL28A1Q2UY09 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
COL28A1Q2UY09 LINC02471-203ENST00000641941 4752 ntBASIC3.91□□□□□ -1.78
COL28A1Q2UY09 RNU6-343P-201ENST00000364709 104 ntBASIC3.91□□□□□ -1.78
COL28A1Q2UY09 U3.15-201ENST00000365398 212 ntBASIC3.91□□□□□ -1.78
COL28A1Q2UY09 RNU6-213P-201ENST00000384051 104 ntBASIC3.91□□□□□ -1.78
COL28A1Q2UY09 RNU6-837P-201ENST00000391056 108 ntBASIC3.91□□□□□ -1.78
COL28A1Q2UY09 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
COL28A1Q2UY09 AL138878.1-201ENST00000405131 347 ntBASIC3.91□□□□□ -1.78
COL28A1Q2UY09 RNU2-15P-201ENST00000410692 191 ntBASIC3.91□□□□□ -1.78
COL28A1Q2UY09 RNU6-920P-201ENST00000410926 92 ntBASIC3.91□□□□□ -1.78
COL28A1Q2UY09 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC3.91□□□□□ -1.78
COL28A1Q2UY09 AC007742.1-201ENST00000425789 329 ntBASIC3.91□□□□□ -1.78
COL28A1Q2UY09 ELOCP26-201ENST00000436067 329 ntBASIC3.91□□□□□ -1.78
COL28A1Q2UY09 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC3.91□□□□□ -1.78
COL28A1Q2UY09 NDUFS5P3-201ENST00000450668 321 ntBASIC3.91□□□□□ -1.78
COL28A1Q2UY09 HMGB3P22-202ENST00000451823 572 ntBASIC3.91□□□□□ -1.78
COL28A1Q2UY09 UBE2DNL-203ENST00000474922 222 ntBASIC3.91□□□□□ -1.78
COL28A1Q2UY09 RPS27AP1-201ENST00000475545 471 ntBASIC3.91□□□□□ -1.78
COL28A1Q2UY09 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC3.91□□□□□ -1.78
COL28A1Q2UY09 RN7SL293P-201ENST00000481765 281 ntBASIC3.91□□□□□ -1.78
COL28A1Q2UY09 AC109486.1-201ENST00000486833 374 ntBASIC3.91□□□□□ -1.78
COL28A1Q2UY09 AF213884.1-201ENST00000488102 463 ntBASIC3.91□□□□□ -1.78
COL28A1Q2UY09 AC092045.1-201ENST00000495716 1231 ntBASIC3.91□□□□□ -1.78
COL28A1Q2UY09 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC3.91□□□□□ -1.78
COL28A1Q2UY09 AC106038.2-201ENST00000520706 568 ntBASIC3.91□□□□□ -1.78
COL28A1Q2UY09 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC3.91□□□□□ -1.78
COL28A1Q2UY09 AC092851.1-201ENST00000535964 478 ntBASIC3.91□□□□□ -1.78
COL28A1Q2UY09 AC006064.5-201ENST00000541782 248 ntBASIC3.91□□□□□ -1.78
COL28A1Q2UY09 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.91□□□□□ -1.78
COL28A1Q2UY09 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC3.91□□□□□ -1.78
COL28A1Q2UY09 OR6C7P-201ENST00000547875 934 ntBASIC3.91□□□□□ -1.78
COL28A1Q2UY09 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC3.91□□□□□ -1.78
COL28A1Q2UY09 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC3.91□□□□□ -1.78
COL28A1Q2UY09 AC141257.3-201ENST00000572906 215 ntBASIC3.91□□□□□ -1.78
COL28A1Q2UY09 AC011260.1-201ENST00000578420 472 ntBASIC3.91□□□□□ -1.78
COL28A1Q2UY09 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC3.91□□□□□ -1.78
COL28A1Q2UY09 PIGPP4-201ENST00000584447 307 ntBASIC3.91□□□□□ -1.78
COL28A1Q2UY09 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.91□□□□□ -1.78
COL28A1Q2UY09 AL031985.2-201ENST00000600955 480 ntBASIC3.91□□□□□ -1.78
COL28A1Q2UY09 WISP1-OT1-201ENST00000602893 642 ntBASIC3.91□□□□□ -1.78
COL28A1Q2UY09 AL365503.1-201ENST00000605247 905 ntBASIC3.91□□□□□ -1.78
COL28A1Q2UY09 AC105129.3-201ENST00000605455 485 ntBASIC3.91□□□□□ -1.78
COL28A1Q2UY09 AL390208.1-201ENST00000605885 644 ntBASIC3.91□□□□□ -1.78
COL28A1Q2UY09 AL391497.1-201ENST00000608671 547 ntBASIC3.91□□□□□ -1.78
COL28A1Q2UY09 OR6R2P-201ENST00000609216 300 ntBASIC3.91□□□□□ -1.78
COL28A1Q2UY09 MIR7975-201ENST00000619350 68 ntBASIC3.91□□□□□ -1.78
COL28A1Q2UY09 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC3.91□□□□□ -1.78
COL28A1Q2UY09 TEX41-265ENST00000627785 704 ntTSL 5 BASIC3.91□□□□□ -1.78
COL28A1Q2UY09 MIR3651-201ENST00000630427 90 ntBASIC3.91□□□□□ -1.78
COL28A1Q2UY09 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms