Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC2.51□□□□□ -2.01
FOXA1P55317 RN7SKP132-201ENST00000516001 208 ntBASIC2.51□□□□□ -2.01
FOXA1P55317 RN7SKP277-201ENST00000516895 283 ntBASIC2.51□□□□□ -2.01
FOXA1P55317 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC2.51□□□□□ -2.01
FOXA1P55317 AC004486.1-201ENST00000546846 233 ntBASIC2.51□□□□□ -2.01
FOXA1P55317 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC2.51□□□□□ -2.01
FOXA1P55317 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC2.51□□□□□ -2.01
FOXA1P55317 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.51□□□□□ -2.01
FOXA1P55317 AC090312.2-201ENST00000582687 378 ntBASIC2.51□□□□□ -2.01
FOXA1P55317 AL356575.1-201ENST00000603008 283 ntBASIC2.51□□□□□ -2.01
FOXA1P55317 AP000787.2-201ENST00000604432 568 ntBASIC2.51□□□□□ -2.01
FOXA1P55317 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC2.51□□□□□ -2.01
FOXA1P55317 AL118556.2-201ENST00000614375 824 ntBASIC2.51□□□□□ -2.01
FOXA1P55317 FRG1HP-204ENST00000617940 757 ntBASIC2.51□□□□□ -2.01
FOXA1P55317 AP006248.3-201ENST00000623580 594 ntBASIC2.51□□□□□ -2.01
FOXA1P55317 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC2.51□□□□□ -2.01
FOXA1P55317 SCARNA15.3-201ENST00000626315 122 ntBASIC2.51□□□□□ -2.01
FOXA1P55317 SCARNA4.1-201ENST00000628597 123 ntBASIC2.51□□□□□ -2.01
FOXA1P55317 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
FOXA1P55317 PAPPA-AS1-201ENST00000445861 2450 ntBASIC2.5□□□□□ -2.01
FOXA1P55317 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
FOXA1P55317 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
FOXA1P55317 AL512646.1-201ENST00000269395 1077 ntBASIC2.5□□□□□ -2.01
FOXA1P55317 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
FOXA1P55317 RNU1-100P-201ENST00000365255 165 ntBASIC2.5□□□□□ -2.01
FOXA1P55317 EIF5P1-201ENST00000400019 1231 ntBASIC2.5□□□□□ -2.01
FOXA1P55317 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
FOXA1P55317 TEX41-204ENST00000423031 491 ntTSL 4 BASIC2.5□□□□□ -2.01
FOXA1P55317 UBE2V1P5-201ENST00000440070 405 ntBASIC2.5□□□□□ -2.01
FOXA1P55317 RPS24P13-201ENST00000442520 397 ntBASIC2.5□□□□□ -2.01
FOXA1P55317 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC2.5□□□□□ -2.01
FOXA1P55317 AC093392.2-201ENST00000450682 337 ntBASIC2.5□□□□□ -2.01
FOXA1P55317 AL035407.2-201ENST00000454090 378 ntBASIC2.5□□□□□ -2.01
FOXA1P55317 AC008280.2-201ENST00000455473 307 ntBASIC2.5□□□□□ -2.01
FOXA1P55317 AC008571.1-201ENST00000467232 300 ntBASIC2.5□□□□□ -2.01
FOXA1P55317 NCOR1P1-202ENST00000486162 291 ntBASIC2.5□□□□□ -2.01
FOXA1P55317 SRIP1-201ENST00000489235 288 ntBASIC2.5□□□□□ -2.01
FOXA1P55317 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC2.5□□□□□ -2.01
FOXA1P55317 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC2.5□□□□□ -2.01
FOXA1P55317 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC2.5□□□□□ -2.01
FOXA1P55317 HMGB3P15-201ENST00000507326 574 ntBASIC2.5□□□□□ -2.01
FOXA1P55317 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC2.5□□□□□ -2.01
FOXA1P55317 AC010468.3-201ENST00000508225 458 ntBASIC2.5□□□□□ -2.01
FOXA1P55317 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC2.5□□□□□ -2.01
FOXA1P55317 RNU6-1102P-201ENST00000516149 96 ntBASIC2.5□□□□□ -2.01
FOXA1P55317 RNU6-826P-201ENST00000516827 104 ntBASIC2.5□□□□□ -2.01
FOXA1P55317 RN7SKP96-201ENST00000516948 297 ntBASIC2.5□□□□□ -2.01
FOXA1P55317 SNORA76.2-201ENST00000517095 137 ntBASIC2.5□□□□□ -2.01
FOXA1P55317 SNORA31.21-201ENST00000517180 77 ntBASIC2.5□□□□□ -2.01
FOXA1P55317 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC2.5□□□□□ -2.01
FOXA1P55317 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC2.5□□□□□ -2.01
FOXA1P55317 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC2.5□□□□□ -2.01
FOXA1P55317 AP003717.3-201ENST00000544832 1180 ntBASIC2.5□□□□□ -2.01
FOXA1P55317 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC2.5□□□□□ -2.01
FOXA1P55317 AC128657.1-201ENST00000549459 145 ntBASIC2.5□□□□□ -2.01
FOXA1P55317 SNRPGP1-201ENST00000553864 222 ntBASIC2.5□□□□□ -2.01
FOXA1P55317 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC2.5□□□□□ -2.01
FOXA1P55317 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC2.5□□□□□ -2.01
FOXA1P55317 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC2.5□□□□□ -2.01
FOXA1P55317 MIR3670-2-201ENST00000582974 65 ntBASIC2.5□□□□□ -2.01
FOXA1P55317 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC2.5□□□□□ -2.01
FOXA1P55317 MIR3670-1-201ENST00000584160 65 ntBASIC2.5□□□□□ -2.01
FOXA1P55317 MIR3670-3-201ENST00000584855 65 ntBASIC2.5□□□□□ -2.01
FOXA1P55317 YWHAQP7-201ENST00000603536 658 ntBASIC2.5□□□□□ -2.01
FOXA1P55317 MIR3670-4-201ENST00000612260 65 ntBASIC2.5□□□□□ -2.01
FOXA1P55317 AC018926.3-201ENST00000618841 406 ntBASIC2.5□□□□□ -2.01
FOXA1P55317 AL163051.2-201ENST00000618976 735 ntBASIC2.5□□□□□ -2.01
FOXA1P55317 AL161616.2-201ENST00000622001 565 ntTSL 4 BASIC2.5□□□□□ -2.01
FOXA1P55317 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC2.5□□□□□ -2.01
FOXA1P55317 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC2.5□□□□□ -2.01
FOXA1P55317 AL590396.2-201ENST00000636511 1041 ntBASIC2.5□□□□□ -2.01
FOXA1P55317 ASAH1-263ENST00000637872 886 ntTSL 5 BASIC2.5□□□□□ -2.01
FOXA1P55317 FAM157B-203ENST00000639350 358 ntBASIC2.5□□□□□ -2.01
FOXA1P55317 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC2.5□□□□□ -2.01
FOXA1P55317 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC2.5□□□□□ -2.01
FOXA1P55317 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.5□□□□□ -2.01
FOXA1P55317 AL157700.1-201ENST00000561973 1432 ntBASIC2.5□□□□□ -2.01
FOXA1P55317 MTND4P8-201ENST00000514997 1362 ntBASIC2.49□□□□□ -2.01
FOXA1P55317 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC2.49□□□□□ -2.01
FOXA1P55317 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.49□□□□□ -2.01
FOXA1P55317 SEC63P2-201ENST00000503863 1939 ntBASIC2.49□□□□□ -2.01
FOXA1P55317 AC016716.1-201ENST00000265882 708 ntBASIC2.49□□□□□ -2.01
FOXA1P55317 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
FOXA1P55317 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.49□□□□□ -2.01
FOXA1P55317 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
FOXA1P55317 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
FOXA1P55317 AC241520.1-201ENST00000422654 1099 ntBASIC2.49□□□□□ -2.01
FOXA1P55317 AC073310.1-201ENST00000423226 1033 ntBASIC2.49□□□□□ -2.01
FOXA1P55317 VN1R42P-201ENST00000424651 344 ntBASIC2.49□□□□□ -2.01
FOXA1P55317 AC073508.1-201ENST00000428866 656 ntBASIC2.49□□□□□ -2.01
FOXA1P55317 OR51AB1P-201ENST00000429046 620 ntBASIC2.49□□□□□ -2.01
FOXA1P55317 RPL21P2-201ENST00000440049 481 ntBASIC2.49□□□□□ -2.01
FOXA1P55317 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC2.49□□□□□ -2.01
FOXA1P55317 RPL23AP33-201ENST00000442301 452 ntBASIC2.49□□□□□ -2.01
FOXA1P55317 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC2.49□□□□□ -2.01
FOXA1P55317 IGKV1OR-3-201ENST00000446944 348 ntBASIC2.49□□□□□ -2.01
FOXA1P55317 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC2.49□□□□□ -2.01
FOXA1P55317 BX276092.4-201ENST00000452056 248 ntBASIC2.49□□□□□ -2.01
FOXA1P55317 MTND2P30-201ENST00000456663 382 ntBASIC2.49□□□□□ -2.01
FOXA1P55317 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC2.49□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 124.2 ms