Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 MIR6719-201ENST00000622428 87 ntBASIC4.55□□□□□ -1.68
MSX2P35548 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
MSX2P35548 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC4.55□□□□□ -1.68
MSX2P35548 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC4.55□□□□□ -1.68
MSX2P35548 AL596275.2-204ENST00000641628 552 ntBASIC4.55□□□□□ -1.68
MSX2P35548 AL596275.2-206ENST00000641957 626 ntBASIC4.55□□□□□ -1.68
MSX2P35548 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
MSX2P35548 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC4.55□□□□□ -1.68
MSX2P35548 RIOK3P1-201ENST00000418778 1528 ntBASIC4.55□□□□□ -1.68
MSX2P35548 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.55□□□□□ -1.68
MSX2P35548 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
MSX2P35548 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC4.55□□□□□ -1.68
MSX2P35548 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.54□□□□□ -1.68
MSX2P35548 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC4.54□□□□□ -1.68
MSX2P35548 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.54□□□□□ -1.68
MSX2P35548 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
MSX2P35548 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
MSX2P35548 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
MSX2P35548 RN7SKP160-201ENST00000363804 340 ntBASIC4.54□□□□□ -1.68
MSX2P35548 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC4.54□□□□□ -1.68
MSX2P35548 AC019155.1-201ENST00000382242 574 ntBASIC4.54□□□□□ -1.68
MSX2P35548 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
MSX2P35548 AC009804.1-201ENST00000400949 179 ntBASIC4.54□□□□□ -1.68
MSX2P35548 AL136116.1-201ENST00000403591 381 ntBASIC4.54□□□□□ -1.68
MSX2P35548 AL023807.1-201ENST00000407932 359 ntBASIC4.54□□□□□ -1.68
MSX2P35548 RNA5SP345-201ENST00000410646 108 ntBASIC4.54□□□□□ -1.68
MSX2P35548 RN7SKP126-201ENST00000411143 300 ntBASIC4.54□□□□□ -1.68
MSX2P35548 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC4.54□□□□□ -1.68
MSX2P35548 MTCO3P12-201ENST00000416718 547 ntBASIC4.54□□□□□ -1.68
MSX2P35548 AL355433.1-201ENST00000422804 300 ntBASIC4.54□□□□□ -1.68
MSX2P35548 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC4.54□□□□□ -1.68
MSX2P35548 OR4F13P-201ENST00000428478 931 ntBASIC4.54□□□□□ -1.68
MSX2P35548 OR2B7P-201ENST00000429302 934 ntBASIC4.54□□□□□ -1.68
MSX2P35548 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC4.54□□□□□ -1.68
MSX2P35548 RPL36P19-201ENST00000430744 301 ntBASIC4.54□□□□□ -1.68
MSX2P35548 AC007556.1-201ENST00000432133 307 ntTSL 2 BASIC4.54□□□□□ -1.68
MSX2P35548 GPR143P-201ENST00000434155 205 ntBASIC4.54□□□□□ -1.68
MSX2P35548 AL451139.1-201ENST00000434718 346 ntBASIC4.54□□□□□ -1.68
MSX2P35548 AL627308.1-201ENST00000435693 821 ntBASIC4.54□□□□□ -1.68
MSX2P35548 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC4.54□□□□□ -1.68
MSX2P35548 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC4.54□□□□□ -1.68
MSX2P35548 AP000893.1-201ENST00000474462 794 ntBASIC4.54□□□□□ -1.68
MSX2P35548 HMGB1P21-201ENST00000502313 581 ntBASIC4.54□□□□□ -1.68
MSX2P35548 RPL38P4-201ENST00000502376 214 ntBASIC4.54□□□□□ -1.68
MSX2P35548 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC4.54□□□□□ -1.68
MSX2P35548 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
MSX2P35548 NPM1P41-201ENST00000512920 831 ntBASIC4.54□□□□□ -1.68
MSX2P35548 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC4.54□□□□□ -1.68
MSX2P35548 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC4.54□□□□□ -1.68
MSX2P35548 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC4.54□□□□□ -1.68
MSX2P35548 MAL2-208ENST00000523307 556 ntTSL 4 BASIC4.54□□□□□ -1.68
MSX2P35548 SUB1P1-201ENST00000524415 382 ntBASIC4.54□□□□□ -1.68
MSX2P35548 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
MSX2P35548 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
MSX2P35548 HAUS8P1-201ENST00000549005 542 ntBASIC4.54□□□□□ -1.68
MSX2P35548 SCOCP1-201ENST00000554676 349 ntBASIC4.54□□□□□ -1.68
MSX2P35548 MEG8-218ENST00000556720 456 ntTSL 3 BASIC4.54□□□□□ -1.68
MSX2P35548 AC020661.2-201ENST00000560114 134 ntBASIC4.54□□□□□ -1.68
MSX2P35548 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC4.54□□□□□ -1.68
MSX2P35548 AC015912.2-201ENST00000571053 181 ntBASIC4.54□□□□□ -1.68
MSX2P35548 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC4.54□□□□□ -1.68
MSX2P35548 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC4.54□□□□□ -1.68
MSX2P35548 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC4.54□□□□□ -1.68
MSX2P35548 AC113139.1-201ENST00000605049 239 ntBASIC4.54□□□□□ -1.68
MSX2P35548 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC4.54□□□□□ -1.68
MSX2P35548 AL603758.1-201ENST00000618654 241 ntBASIC4.54□□□□□ -1.68
MSX2P35548 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC4.54□□□□□ -1.68
MSX2P35548 CCT5-215ENST00000625723 135 ntTSL 5 BASIC4.54□□□□□ -1.68
MSX2P35548 WDR75-207ENST00000631047 270 ntTSL 5 BASIC4.54□□□□□ -1.68
MSX2P35548 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC4.54□□□□□ -1.68
MSX2P35548 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
MSX2P35548 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
MSX2P35548 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
MSX2P35548 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
MSX2P35548 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC4.54□□□□□ -1.68
MSX2P35548 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
MSX2P35548 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
MSX2P35548 AC006020.1-201ENST00000420179 1854 ntBASIC4.54□□□□□ -1.68
MSX2P35548 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC4.54□□□□□ -1.68
MSX2P35548 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
MSX2P35548 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
MSX2P35548 AL592437.2-201ENST00000421655 2434 ntBASIC4.53□□□□□ -1.68
MSX2P35548 SCN1A-220ENST00000641603 12506 ntBASIC4.53□□□□□ -1.68
MSX2P35548 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
MSX2P35548 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
MSX2P35548 AL049555.1-201ENST00000562834 1933 ntBASIC4.53□□□□□ -1.68
MSX2P35548 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
MSX2P35548 Y_RNA.184-201ENST00000363884 108 ntBASIC4.53□□□□□ -1.68
MSX2P35548 MIR1-2-201ENST00000384961 85 ntBASIC4.53□□□□□ -1.68
MSX2P35548 RNA5SP372-201ENST00000390836 115 ntBASIC4.53□□□□□ -1.68
MSX2P35548 RNU2-21P-201ENST00000410368 188 ntBASIC4.53□□□□□ -1.68
MSX2P35548 RNA5SP146-201ENST00000410743 123 ntBASIC4.53□□□□□ -1.68
MSX2P35548 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC4.53□□□□□ -1.68
MSX2P35548 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC4.53□□□□□ -1.68
MSX2P35548 MTND3P8-201ENST00000412909 339 ntBASIC4.53□□□□□ -1.68
MSX2P35548 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC4.53□□□□□ -1.68
MSX2P35548 AF186996.5-201ENST00000418098 904 ntBASIC4.53□□□□□ -1.68
MSX2P35548 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC4.53□□□□□ -1.68
MSX2P35548 Z74021.1-201ENST00000423610 407 ntBASIC4.53□□□□□ -1.68
MSX2P35548 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC4.53□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 87.4 ms