Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 MTCYBP31-201ENST00000438855 1122 ntBASIC3.13□□□□□ -1.91
SDC1P18827 AC092427.1-201ENST00000439177 601 ntBASIC3.13□□□□□ -1.91
SDC1P18827 AC122718.1-201ENST00000439448 744 ntBASIC3.13□□□□□ -1.91
SDC1P18827 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC3.13□□□□□ -1.91
SDC1P18827 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC3.13□□□□□ -1.91
SDC1P18827 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC3.13□□□□□ -1.91
SDC1P18827 MTCYBP11-201ENST00000447254 1109 ntBASIC3.13□□□□□ -1.91
SDC1P18827 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC3.13□□□□□ -1.91
SDC1P18827 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC3.13□□□□□ -1.91
SDC1P18827 AC125238.1-201ENST00000448842 249 ntBASIC3.13□□□□□ -1.91
SDC1P18827 AC115115.1-201ENST00000449927 248 ntBASIC3.13□□□□□ -1.91
SDC1P18827 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC3.13□□□□□ -1.91
SDC1P18827 TRGVB-201ENST00000453257 471 ntBASIC3.13□□□□□ -1.91
SDC1P18827 BTF3P5-201ENST00000457252 467 ntBASIC3.13□□□□□ -1.91
SDC1P18827 RPS20P24-201ENST00000457473 361 ntBASIC3.13□□□□□ -1.91
SDC1P18827 RPL7P15-201ENST00000461190 712 ntBASIC3.13□□□□□ -1.91
SDC1P18827 RN7SL542P-201ENST00000467147 294 ntBASIC3.13□□□□□ -1.91
SDC1P18827 RPS15AP17-201ENST00000470598 390 ntBASIC3.13□□□□□ -1.91
SDC1P18827 AP002884.2-201ENST00000471647 395 ntBASIC3.13□□□□□ -1.91
SDC1P18827 RPL21P13-201ENST00000488305 481 ntBASIC3.13□□□□□ -1.91
SDC1P18827 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
SDC1P18827 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.13□□□□□ -1.91
SDC1P18827 MTND2P32-201ENST00000521584 1038 ntBASIC3.13□□□□□ -1.91
SDC1P18827 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC3.13□□□□□ -1.91
SDC1P18827 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC3.13□□□□□ -1.91
SDC1P18827 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC3.13□□□□□ -1.91
SDC1P18827 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
SDC1P18827 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.13□□□□□ -1.91
SDC1P18827 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC3.13□□□□□ -1.91
SDC1P18827 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC3.13□□□□□ -1.91
SDC1P18827 CCDC58P3-201ENST00000590792 430 ntBASIC3.13□□□□□ -1.91
SDC1P18827 AC245036.5-201ENST00000596330 847 ntBASIC3.13□□□□□ -1.91
SDC1P18827 BNIP3P26-201ENST00000600827 554 ntBASIC3.13□□□□□ -1.91
SDC1P18827 AL355812.1-201ENST00000603215 216 ntBASIC3.13□□□□□ -1.91
SDC1P18827 DPRXP5-201ENST00000604662 539 ntBASIC3.13□□□□□ -1.91
SDC1P18827 AC069304.2-201ENST00000605154 435 ntBASIC3.13□□□□□ -1.91
SDC1P18827 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.13□□□□□ -1.91
SDC1P18827 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC3.13□□□□□ -1.91
SDC1P18827 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.13□□□□□ -1.91
SDC1P18827 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC3.13□□□□□ -1.91
SDC1P18827 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.13□□□□□ -1.91
SDC1P18827 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.13□□□□□ -1.91
SDC1P18827 SLC10A5P1-201ENST00000379063 1306 ntBASIC3.13□□□□□ -1.91
SDC1P18827 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.12□□□□□ -1.91
SDC1P18827 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC3.12□□□□□ -1.91
SDC1P18827 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.12□□□□□ -1.91
SDC1P18827 SRP72P2-201ENST00000344851 1979 ntBASIC3.12□□□□□ -1.91
SDC1P18827 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
SDC1P18827 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.12□□□□□ -1.91
SDC1P18827 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
SDC1P18827 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC3.12□□□□□ -1.91
SDC1P18827 RNU4-92P-201ENST00000363783 136 ntBASIC3.12□□□□□ -1.91
SDC1P18827 Y_RNA.192-201ENST00000363977 102 ntBASIC3.12□□□□□ -1.91
SDC1P18827 RNA5SP189-201ENST00000364920 115 ntBASIC3.12□□□□□ -1.91
SDC1P18827 RNU1-64P-201ENST00000365443 163 ntBASIC3.12□□□□□ -1.91
SDC1P18827 RNU6-636P-201ENST00000384598 107 ntBASIC3.12□□□□□ -1.91
SDC1P18827 MIR554-201ENST00000384874 96 ntBASIC3.12□□□□□ -1.91
SDC1P18827 AL138880.1-201ENST00000405824 642 ntBASIC3.12□□□□□ -1.91
SDC1P18827 RNA5SP44-201ENST00000410446 133 ntBASIC3.12□□□□□ -1.91
SDC1P18827 AC007390.1-201ENST00000415722 356 ntBASIC3.12□□□□□ -1.91
SDC1P18827 BX842559.1-201ENST00000419615 532 ntBASIC3.12□□□□□ -1.91
SDC1P18827 AL050321.1-201ENST00000432363 400 ntBASIC3.12□□□□□ -1.91
SDC1P18827 MTND2P5-201ENST00000432656 1006 ntBASIC3.12□□□□□ -1.91
SDC1P18827 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC3.12□□□□□ -1.91
SDC1P18827 CYCSP43-201ENST00000438233 310 ntBASIC3.12□□□□□ -1.91
SDC1P18827 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC3.12□□□□□ -1.91
SDC1P18827 MTND2P20-201ENST00000440805 661 ntBASIC3.12□□□□□ -1.91
SDC1P18827 MTCO2P25-201ENST00000447065 681 ntBASIC3.12□□□□□ -1.91
SDC1P18827 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC3.12□□□□□ -1.91
SDC1P18827 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC3.12□□□□□ -1.91
SDC1P18827 AL445669.2-201ENST00000454425 421 ntBASIC3.12□□□□□ -1.91
SDC1P18827 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.12□□□□□ -1.91
SDC1P18827 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.12□□□□□ -1.91
SDC1P18827 RPL7P38-201ENST00000488396 739 ntBASIC3.12□□□□□ -1.91
SDC1P18827 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC3.12□□□□□ -1.91
SDC1P18827 AC093663.1-201ENST00000497190 394 ntBASIC3.12□□□□□ -1.91
SDC1P18827 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.12□□□□□ -1.91
SDC1P18827 HMGB1P22-201ENST00000505315 124 ntBASIC3.12□□□□□ -1.91
SDC1P18827 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC3.12□□□□□ -1.91
SDC1P18827 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC3.12□□□□□ -1.91
SDC1P18827 AC104986.1-201ENST00000517978 436 ntBASIC3.12□□□□□ -1.91
SDC1P18827 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC3.12□□□□□ -1.91
SDC1P18827 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC3.12□□□□□ -1.91
SDC1P18827 IGKV2D-19-201ENST00000523346 262 ntBASIC3.12□□□□□ -1.91
SDC1P18827 AP001372.4-201ENST00000524889 472 ntBASIC3.12□□□□□ -1.91
SDC1P18827 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC3.12□□□□□ -1.91
SDC1P18827 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC3.12□□□□□ -1.91
SDC1P18827 AP000619.3-201ENST00000535634 1127 ntBASIC3.12□□□□□ -1.91
SDC1P18827 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
SDC1P18827 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC3.12□□□□□ -1.91
SDC1P18827 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
SDC1P18827 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC3.12□□□□□ -1.91
SDC1P18827 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.12□□□□□ -1.91
SDC1P18827 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC3.12□□□□□ -1.91
SDC1P18827 AC006130.2-201ENST00000586202 326 ntBASIC3.12□□□□□ -1.91
SDC1P18827 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC3.12□□□□□ -1.91
SDC1P18827 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.12□□□□□ -1.91
SDC1P18827 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.12□□□□□ -1.91
SDC1P18827 AC018816.2-201ENST00000621460 353 ntBASIC3.12□□□□□ -1.91
SDC1P18827 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms