Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC3.34□□□□□ -1.87
HOXD4P09016 AC109446.2-201ENST00000567872 497 ntBASIC3.34□□□□□ -1.87
HOXD4P09016 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.34□□□□□ -1.87
HOXD4P09016 MIR3922-201ENST00000585192 84 ntBASIC3.34□□□□□ -1.87
HOXD4P09016 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXD4P09016 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC3.34□□□□□ -1.87
HOXD4P09016 AL390838.2-201ENST00000602394 274 ntBASIC3.34□□□□□ -1.87
HOXD4P09016 AC010591.1-201ENST00000603941 649 ntBASIC3.34□□□□□ -1.87
HOXD4P09016 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC3.34□□□□□ -1.87
HOXD4P09016 AC099778.2-201ENST00000610904 211 ntBASIC3.34□□□□□ -1.87
HOXD4P09016 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC3.34□□□□□ -1.87
HOXD4P09016 AL442067.2-201ENST00000614033 363 ntBASIC3.34□□□□□ -1.87
HOXD4P09016 AC069209.1-201ENST00000619282 651 ntBASIC3.34□□□□□ -1.87
HOXD4P09016 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
HOXD4P09016 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
HOXD4P09016 AP000526.1-201ENST00000603308 1388 ntBASIC3.34□□□□□ -1.88
HOXD4P09016 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.34□□□□□ -1.88
HOXD4P09016 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.34□□□□□ -1.88
HOXD4P09016 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.34□□□□□ -1.88
HOXD4P09016 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
HOXD4P09016 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC3.33□□□□□ -1.88
HOXD4P09016 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.33□□□□□ -1.88
HOXD4P09016 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC3.33□□□□□ -1.88
HOXD4P09016 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
HOXD4P09016 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HOXD4P09016 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HOXD4P09016 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HOXD4P09016 RNU6-1066P-201ENST00000363573 105 ntBASIC3.33□□□□□ -1.88
HOXD4P09016 RNVU1-14-201ENST00000384770 164 ntBASIC3.33□□□□□ -1.88
HOXD4P09016 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
HOXD4P09016 DSTNP4-201ENST00000399472 474 ntBASIC3.33□□□□□ -1.88
HOXD4P09016 HLFP1-201ENST00000402375 499 ntBASIC3.33□□□□□ -1.88
HOXD4P09016 TEX41-202ENST00000414256 604 ntTSL 5 BASIC3.33□□□□□ -1.88
HOXD4P09016 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXD4P09016 FCF1P2-201ENST00000415284 583 ntBASIC3.33□□□□□ -1.88
HOXD4P09016 LUZP4P1-201ENST00000415420 344 ntBASIC3.33□□□□□ -1.88
HOXD4P09016 AC245052.5-201ENST00000416320 649 ntBASIC3.33□□□□□ -1.88
HOXD4P09016 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXD4P09016 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC3.33□□□□□ -1.88
HOXD4P09016 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC3.33□□□□□ -1.88
HOXD4P09016 RPL23AP33-201ENST00000442301 452 ntBASIC3.33□□□□□ -1.88
HOXD4P09016 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HOXD4P09016 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC3.33□□□□□ -1.88
HOXD4P09016 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC3.33□□□□□ -1.88
HOXD4P09016 AL034418.1-201ENST00000448675 860 ntBASIC3.33□□□□□ -1.88
HOXD4P09016 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXD4P09016 AC007967.1-201ENST00000455422 1159 ntBASIC3.33□□□□□ -1.88
HOXD4P09016 AL109741.2-201ENST00000455561 343 ntBASIC3.33□□□□□ -1.88
HOXD4P09016 UBDP1-202ENST00000457888 382 ntBASIC3.33□□□□□ -1.88
HOXD4P09016 AP000873.1-201ENST00000463987 400 ntBASIC3.33□□□□□ -1.88
HOXD4P09016 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC3.33□□□□□ -1.88
HOXD4P09016 AP002884.2-201ENST00000471647 395 ntBASIC3.33□□□□□ -1.88
HOXD4P09016 RPL32P34-201ENST00000486380 400 ntBASIC3.33□□□□□ -1.88
HOXD4P09016 AC005726.1-201ENST00000494679 427 ntBASIC3.33□□□□□ -1.88
HOXD4P09016 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.33□□□□□ -1.88
HOXD4P09016 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXD4P09016 PTK2-220ENST00000520151 573 ntTSL 4 BASIC3.33□□□□□ -1.88
HOXD4P09016 SUMO2P20-201ENST00000520803 283 ntBASIC3.33□□□□□ -1.88
HOXD4P09016 NDUFB9P3-201ENST00000521269 501 ntBASIC3.33□□□□□ -1.88
HOXD4P09016 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXD4P09016 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HOXD4P09016 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC3.33□□□□□ -1.88
HOXD4P09016 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXD4P09016 OR5B10P-201ENST00000532869 642 ntBASIC3.33□□□□□ -1.88
HOXD4P09016 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HOXD4P09016 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC3.33□□□□□ -1.88
HOXD4P09016 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC3.33□□□□□ -1.88
HOXD4P09016 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC3.33□□□□□ -1.88
HOXD4P09016 OR6C73P-201ENST00000546432 358 ntBASIC3.33□□□□□ -1.88
HOXD4P09016 ELOCP32-201ENST00000548625 324 ntBASIC3.33□□□□□ -1.88
HOXD4P09016 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.33□□□□□ -1.88
HOXD4P09016 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC3.33□□□□□ -1.88
HOXD4P09016 RPL21P12-201ENST00000559810 515 ntBASIC3.33□□□□□ -1.88
HOXD4P09016 MTCYBP28-201ENST00000566728 1132 ntBASIC3.33□□□□□ -1.88
HOXD4P09016 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXD4P09016 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC3.33□□□□□ -1.88
HOXD4P09016 Z99497.2-201ENST00000603634 310 ntBASIC3.33□□□□□ -1.88
HOXD4P09016 Z94722.1-201ENST00000604328 474 ntBASIC3.33□□□□□ -1.88
HOXD4P09016 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC3.33□□□□□ -1.88
HOXD4P09016 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.33□□□□□ -1.88
HOXD4P09016 VIS1.1-201ENST00000610517 203 ntBASIC3.33□□□□□ -1.88
HOXD4P09016 XIST_intron.1-201ENST00000619444 68 ntBASIC3.33□□□□□ -1.88
HOXD4P09016 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC3.33□□□□□ -1.88
HOXD4P09016 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXD4P09016 AP003399.1-201ENST00000637534 361 ntBASIC3.33□□□□□ -1.88
HOXD4P09016 ZNF736P9Y-201ENST00000439586 1345 ntBASIC3.33□□□□□ -1.88
HOXD4P09016 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
HOXD4P09016 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.32□□□□□ -1.88
HOXD4P09016 RNA5SP51-201ENST00000364750 119 ntBASIC3.32□□□□□ -1.88
HOXD4P09016 SUGT1P1-201ENST00000379514 476 ntBASIC3.32□□□□□ -1.88
HOXD4P09016 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC3.32□□□□□ -1.88
HOXD4P09016 HSPE1P8-201ENST00000406997 288 ntBASIC3.32□□□□□ -1.88
HOXD4P09016 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXD4P09016 RPL31P2-201ENST00000413849 377 ntBASIC3.32□□□□□ -1.88
HOXD4P09016 AC017079.2-201ENST00000416102 485 ntBASIC3.32□□□□□ -1.88
HOXD4P09016 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC3.32□□□□□ -1.88
HOXD4P09016 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXD4P09016 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXD4P09016 OR51AB1P-201ENST00000429046 620 ntBASIC3.32□□□□□ -1.88
HOXD4P09016 CYCSP4-201ENST00000429682 331 ntBASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 108.6 ms