Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.35□□□□□ -1.87
SDC3O75056 AL121895.2-201ENST00000619558 447 ntBASIC3.35□□□□□ -1.87
SDC3O75056 AC018755.4-201ENST00000619715 454 ntBASIC3.35□□□□□ -1.87
SDC3O75056 AC092650.2-201ENST00000619984 902 ntBASIC3.35□□□□□ -1.87
SDC3O75056 AC040168.1-201ENST00000623594 991 ntBASIC3.35□□□□□ -1.87
SDC3O75056 AC090772.4-201ENST00000623599 362 ntBASIC3.35□□□□□ -1.87
SDC3O75056 AC092184.1-201ENST00000625042 715 ntBASIC3.35□□□□□ -1.87
SDC3O75056 AC127502.3-201ENST00000636170 1206 ntBASIC3.35□□□□□ -1.87
SDC3O75056 MIR7153-201ENST00000637758 57 ntBASIC3.35□□□□□ -1.87
SDC3O75056 ZNF663P-202ENST00000641770 1131 ntBASIC3.35□□□□□ -1.87
SDC3O75056 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
SDC3O75056 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
SDC3O75056 AL353743.1-202ENST00000431724 1695 ntBASIC3.35□□□□□ -1.87
SDC3O75056 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC3.35□□□□□ -1.87
SDC3O75056 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.34□□□□□ -1.87
SDC3O75056 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
SDC3O75056 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
SDC3O75056 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.34□□□□□ -1.87
SDC3O75056 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.34□□□□□ -1.87
SDC3O75056 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
SDC3O75056 Y_RNA.111-201ENST00000363248 100 ntBASIC3.34□□□□□ -1.87
SDC3O75056 snoZ40.1-201ENST00000364540 72 ntBASIC3.34□□□□□ -1.87
SDC3O75056 AL122016.1-201ENST00000403365 367 ntBASIC3.34□□□□□ -1.87
SDC3O75056 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC3.34□□□□□ -1.87
SDC3O75056 AC063979.1-201ENST00000415539 377 ntBASIC3.34□□□□□ -1.87
SDC3O75056 AC007390.1-201ENST00000415722 356 ntBASIC3.34□□□□□ -1.87
SDC3O75056 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC3.34□□□□□ -1.87
SDC3O75056 AC007435.1-201ENST00000421086 415 ntBASIC3.34□□□□□ -1.87
SDC3O75056 MTCO3P1-205ENST00000422088 832 ntBASIC3.34□□□□□ -1.87
SDC3O75056 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC3.34□□□□□ -1.87
SDC3O75056 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC3.34□□□□□ -1.87
SDC3O75056 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC3.34□□□□□ -1.87
SDC3O75056 MOB1AP1-201ENST00000430903 535 ntBASIC3.34□□□□□ -1.87
SDC3O75056 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC3.34□□□□□ -1.87
SDC3O75056 USP9YP22-201ENST00000438971 294 ntBASIC3.34□□□□□ -1.87
SDC3O75056 AC093155.1-201ENST00000440164 826 ntBASIC3.34□□□□□ -1.87
SDC3O75056 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.34□□□□□ -1.87
SDC3O75056 MTCO1P48-201ENST00000448024 1096 ntBASIC3.34□□□□□ -1.87
SDC3O75056 AL031313.1-201ENST00000448435 256 ntBASIC3.34□□□□□ -1.87
SDC3O75056 RN7SL594P-201ENST00000470590 287 ntBASIC3.34□□□□□ -1.87
SDC3O75056 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.34□□□□□ -1.87
SDC3O75056 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC3.34□□□□□ -1.87
SDC3O75056 AC021678.1-201ENST00000505195 936 ntBASIC3.34□□□□□ -1.87
SDC3O75056 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC3.34□□□□□ -1.87
SDC3O75056 AC113420.1-201ENST00000507903 571 ntBASIC3.34□□□□□ -1.87
SDC3O75056 AC113347.3-201ENST00000509113 148 ntBASIC3.34□□□□□ -1.87
SDC3O75056 OR4P1P-201ENST00000530808 1136 ntBASIC3.34□□□□□ -1.87
SDC3O75056 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.34□□□□□ -1.87
SDC3O75056 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC3.34□□□□□ -1.87
SDC3O75056 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC3.34□□□□□ -1.87
SDC3O75056 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC3.34□□□□□ -1.87
SDC3O75056 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.34□□□□□ -1.87
SDC3O75056 MIR4425-201ENST00000580572 84 ntBASIC3.34□□□□□ -1.87
SDC3O75056 AL365400.2-201ENST00000605604 902 ntBASIC3.34□□□□□ -1.87
SDC3O75056 AC091946.2-201ENST00000606105 291 ntBASIC3.34□□□□□ -1.87
SDC3O75056 AC092954.1-201ENST00000609121 445 ntBASIC3.34□□□□□ -1.87
SDC3O75056 AL450489.1-201ENST00000612071 468 ntBASIC3.34□□□□□ -1.87
SDC3O75056 AC023158.2-201ENST00000614876 543 ntBASIC3.34□□□□□ -1.87
SDC3O75056 AC010608.3-201ENST00000625048 527 ntBASIC3.34□□□□□ -1.87
SDC3O75056 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
SDC3O75056 Z99496.1-201ENST00000469424 1477 ntBASIC3.34□□□□□ -1.88
SDC3O75056 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
SDC3O75056 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.33□□□□□ -1.88
SDC3O75056 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.33□□□□□ -1.88
SDC3O75056 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.33□□□□□ -1.88
SDC3O75056 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.33□□□□□ -1.88
SDC3O75056 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.33□□□□□ -1.88
SDC3O75056 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
SDC3O75056 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
SDC3O75056 DEFB109C-201ENST00000382575 264 ntBASIC3.33□□□□□ -1.88
SDC3O75056 DEFB109B-201ENST00000382656 264 ntBASIC3.33□□□□□ -1.88
SDC3O75056 SNORA40.2-201ENST00000390847 128 ntBASIC3.33□□□□□ -1.88
SDC3O75056 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC3.33□□□□□ -1.88
SDC3O75056 AL357075.1-201ENST00000404107 726 ntBASIC3.33□□□□□ -1.88
SDC3O75056 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC3.33□□□□□ -1.88
SDC3O75056 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC3.33□□□□□ -1.88
SDC3O75056 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.33□□□□□ -1.88
SDC3O75056 RPL21P109-201ENST00000422213 475 ntBASIC3.33□□□□□ -1.88
SDC3O75056 AC013410.2-201ENST00000422627 201 ntBASIC3.33□□□□□ -1.88
SDC3O75056 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC3.33□□□□□ -1.88
SDC3O75056 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC3.33□□□□□ -1.88
SDC3O75056 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC3.33□□□□□ -1.88
SDC3O75056 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.33□□□□□ -1.88
SDC3O75056 HSD52-202ENST00000436225 772 ntTSL 3 BASIC3.33□□□□□ -1.88
SDC3O75056 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.33□□□□□ -1.88
SDC3O75056 AC006028.1-201ENST00000438379 402 ntBASIC3.33□□□□□ -1.88
SDC3O75056 ZNF736P11Y-201ENST00000442535 1213 ntBASIC3.33□□□□□ -1.88
SDC3O75056 ZNF736P12Y-201ENST00000443152 1243 ntBASIC3.33□□□□□ -1.88
SDC3O75056 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC3.33□□□□□ -1.88
SDC3O75056 RPS29P31-201ENST00000446147 164 ntBASIC3.33□□□□□ -1.88
SDC3O75056 Z75741.1-201ENST00000446793 314 ntBASIC3.33□□□□□ -1.88
SDC3O75056 RPL12P26-201ENST00000452430 487 ntBASIC3.33□□□□□ -1.88
SDC3O75056 ZNF736P4Y-201ENST00000454995 1243 ntBASIC3.33□□□□□ -1.88
SDC3O75056 NECAP1P2-201ENST00000455668 727 ntBASIC3.33□□□□□ -1.88
SDC3O75056 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC3.33□□□□□ -1.88
SDC3O75056 AC010468.1-201ENST00000461022 817 ntBASIC3.33□□□□□ -1.88
SDC3O75056 AP001486.1-201ENST00000463339 476 ntBASIC3.33□□□□□ -1.88
SDC3O75056 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC3.33□□□□□ -1.88
SDC3O75056 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC3.33□□□□□ -1.88
SDC3O75056 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 76.4 ms