Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 AC104073.1-201ENST00000451988 151 ntBASIC3.31□□□□□ -1.88
MSH4O15457 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.31□□□□□ -1.88
MSH4O15457 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
MSH4O15457 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
MSH4O15457 snoZ278.1-201ENST00000517059 112 ntBASIC3.31□□□□□ -1.88
MSH4O15457 PTK2-220ENST00000520151 573 ntTSL 4 BASIC3.31□□□□□ -1.88
MSH4O15457 AC245166.1-201ENST00000521012 253 ntBASIC3.31□□□□□ -1.88
MSH4O15457 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC3.31□□□□□ -1.88
MSH4O15457 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC3.31□□□□□ -1.88
MSH4O15457 LSM6P2-201ENST00000552208 177 ntBASIC3.31□□□□□ -1.88
MSH4O15457 AC126365.2-201ENST00000580630 379 ntBASIC3.31□□□□□ -1.88
MSH4O15457 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
MSH4O15457 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC3.31□□□□□ -1.88
MSH4O15457 AL033523.1-201ENST00000605153 153 ntBASIC3.31□□□□□ -1.88
MSH4O15457 AC018754.1-201ENST00000607486 925 ntBASIC3.31□□□□□ -1.88
MSH4O15457 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.31□□□□□ -1.88
MSH4O15457 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC3.31□□□□□ -1.88
MSH4O15457 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
MSH4O15457 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
MSH4O15457 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.3□□□□□ -1.88
MSH4O15457 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.3□□□□□ -1.88
MSH4O15457 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
MSH4O15457 RNVU1-3-201ENST00000364313 161 ntBASIC3.3□□□□□ -1.88
MSH4O15457 RNU6-335P-201ENST00000364563 113 ntBASIC3.3□□□□□ -1.88
MSH4O15457 AL035405.1-201ENST00000400795 710 ntBASIC3.3□□□□□ -1.88
MSH4O15457 AC027644.1-201ENST00000419595 298 ntBASIC3.3□□□□□ -1.88
MSH4O15457 RPS15AP6-201ENST00000420703 385 ntBASIC3.3□□□□□ -1.88
MSH4O15457 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC3.3□□□□□ -1.88
MSH4O15457 MTCYBP32-201ENST00000427945 1084 ntBASIC3.3□□□□□ -1.88
MSH4O15457 LAMTOR3P1-201ENST00000428620 370 ntBASIC3.3□□□□□ -1.88
MSH4O15457 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC3.3□□□□□ -1.88
MSH4O15457 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.3□□□□□ -1.88
MSH4O15457 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC3.3□□□□□ -1.88
MSH4O15457 AC244505.3-201ENST00000454598 187 ntBASIC3.3□□□□□ -1.88
MSH4O15457 GAPDHP39-201ENST00000481866 979 ntBASIC3.3□□□□□ -1.88
MSH4O15457 AC021146.5-201ENST00000503544 545 ntBASIC3.3□□□□□ -1.88
MSH4O15457 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC3.3□□□□□ -1.88
MSH4O15457 MTCO3P44-201ENST00000510977 541 ntBASIC3.3□□□□□ -1.88
MSH4O15457 SCGB1D5P-201ENST00000515134 247 ntBASIC3.3□□□□□ -1.88
MSH4O15457 AC023632.1-201ENST00000518463 375 ntBASIC3.3□□□□□ -1.88
MSH4O15457 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC3.3□□□□□ -1.88
MSH4O15457 AP000790.1-201ENST00000528891 737 ntBASIC3.3□□□□□ -1.88
MSH4O15457 OR5D17P-201ENST00000531492 978 ntBASIC3.3□□□□□ -1.88
MSH4O15457 EIF4BP1-201ENST00000554881 351 ntBASIC3.3□□□□□ -1.88
MSH4O15457 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC3.3□□□□□ -1.88
MSH4O15457 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC3.3□□□□□ -1.88
MSH4O15457 AC068620.3-201ENST00000602749 560 ntBASIC3.3□□□□□ -1.88
MSH4O15457 GAS5-AS1-201ENST00000602767 694 ntBASIC3.3□□□□□ -1.88
MSH4O15457 AP005137.2-201ENST00000609238 400 ntBASIC3.3□□□□□ -1.88
MSH4O15457 AC005156.1-201ENST00000613371 573 ntBASIC3.3□□□□□ -1.88
MSH4O15457 AC090116.1-201ENST00000615679 446 ntBASIC3.3□□□□□ -1.88
MSH4O15457 AL512427.1-201ENST00000618593 349 ntBASIC3.3□□□□□ -1.88
MSH4O15457 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC3.3□□□□□ -1.88
MSH4O15457 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC3.3□□□□□ -1.88
MSH4O15457 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC3.3□□□□□ -1.88
MSH4O15457 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.3□□□□□ -1.88
MSH4O15457 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
MSH4O15457 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.3□□□□□ -1.88
MSH4O15457 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
MSH4O15457 GABPAP-201ENST00000419271 1356 ntBASIC3.29□□□□□ -1.88
MSH4O15457 AL645568.2-201ENST00000432815 1337 ntBASIC3.29□□□□□ -1.88
MSH4O15457 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.29□□□□□ -1.88
MSH4O15457 RNU6-839P-201ENST00000363347 108 ntBASIC3.29□□□□□ -1.88
MSH4O15457 RNU6-339P-201ENST00000384310 107 ntBASIC3.29□□□□□ -1.88
MSH4O15457 RPL21P3-201ENST00000395517 478 ntBASIC3.29□□□□□ -1.88
MSH4O15457 RNU4-78P-201ENST00000410940 126 ntBASIC3.29□□□□□ -1.88
MSH4O15457 FCF1P2-201ENST00000415284 583 ntBASIC3.29□□□□□ -1.88
MSH4O15457 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC3.29□□□□□ -1.88
MSH4O15457 RPL21P112-201ENST00000434403 463 ntBASIC3.29□□□□□ -1.88
MSH4O15457 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC3.29□□□□□ -1.88
MSH4O15457 AC146507.2-201ENST00000460608 476 ntBASIC3.29□□□□□ -1.88
MSH4O15457 RPS3AP14-201ENST00000483907 780 ntBASIC3.29□□□□□ -1.88
MSH4O15457 AC083906.5-201ENST00000503722 328 ntBASIC3.29□□□□□ -1.88
MSH4O15457 TXNP6-201ENST00000510190 310 ntBASIC3.29□□□□□ -1.88
MSH4O15457 MTCYBP41-201ENST00000528913 1123 ntBASIC3.29□□□□□ -1.88
MSH4O15457 AP003385.6-201ENST00000531603 374 ntBASIC3.29□□□□□ -1.88
MSH4O15457 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.29□□□□□ -1.88
MSH4O15457 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC3.29□□□□□ -1.88
MSH4O15457 AC044913.1-201ENST00000557200 430 ntBASIC3.29□□□□□ -1.88
MSH4O15457 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC3.29□□□□□ -1.88
MSH4O15457 MIR4666A-201ENST00000580160 79 ntBASIC3.29□□□□□ -1.88
MSH4O15457 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC3.29□□□□□ -1.88
MSH4O15457 AL669831.4-202ENST00000590817 238 ntBASIC3.29□□□□□ -1.88
MSH4O15457 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
MSH4O15457 AC253576.2-201ENST00000618815 580 ntBASIC3.29□□□□□ -1.88
MSH4O15457 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.29□□□□□ -1.88
MSH4O15457 AL137790.1-201ENST00000634283 177 ntBASIC3.29□□□□□ -1.88
MSH4O15457 MIR4278-201ENST00000636094 69 ntBASIC3.29□□□□□ -1.88
MSH4O15457 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
MSH4O15457 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
MSH4O15457 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.29□□□□□ -1.88
MSH4O15457 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC3.28□□□□□ -1.88
MSH4O15457 UBE2Q2P1-202ENST00000354771 883 ntBASIC3.28□□□□□ -1.88
MSH4O15457 SNORA7.2-201ENST00000364446 145 ntBASIC3.28□□□□□ -1.88
MSH4O15457 SNORA9.2-201ENST00000365361 133 ntBASIC3.28□□□□□ -1.88
MSH4O15457 RPL31P1-201ENST00000398116 372 ntBASIC3.28□□□□□ -1.88
MSH4O15457 AL023807.1-201ENST00000407932 359 ntBASIC3.28□□□□□ -1.88
MSH4O15457 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC3.28□□□□□ -1.88
MSH4O15457 RNA5SP56-201ENST00000410277 118 ntBASIC3.28□□□□□ -1.88
MSH4O15457 BTF3P8-201ENST00000414577 526 ntBASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 164.1 ms