Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 PDLIM1P4-201ENST00000504327 1006 ntBASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 AC093677.1-201ENST00000514414 678 ntBASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 RN7SKP277-201ENST00000516895 283 ntBASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 OR5G4P-201ENST00000525251 760 ntBASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 MIR5684-201ENST00000585074 65 ntBASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 AL355812.1-201ENST00000603215 216 ntBASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 AL451044.1-201ENST00000604867 238 ntBASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 AL009028.1-201ENST00000604895 802 ntBASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 AC008250.2-201ENST00000615261 205 ntBASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 AP000843.1-201ENST00000624880 701 ntBASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 ZNF33CP-201ENST00000432492 2030 ntBASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 AL049780.3-201ENST00000624612 1583 ntBASIC4.78□□□□□ -1.64
LIMCH1Q9UPQ0 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
LIMCH1Q9UPQ0 NUP58P1-201ENST00000502546 1738 ntBASIC4.78□□□□□ -1.64
LIMCH1Q9UPQ0 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
LIMCH1Q9UPQ0 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
LIMCH1Q9UPQ0 RNVU1-3-201ENST00000364313 161 ntBASIC4.78□□□□□ -1.64
LIMCH1Q9UPQ0 Y_RNA.516-201ENST00000384541 124 ntBASIC4.78□□□□□ -1.64
LIMCH1Q9UPQ0 RNU6ATAC25P-201ENST00000408798 117 ntBASIC4.78□□□□□ -1.64
LIMCH1Q9UPQ0 RPS3AP3-201ENST00000411933 242 ntBASIC4.78□□□□□ -1.64
LIMCH1Q9UPQ0 HMGB3P23-201ENST00000414981 585 ntBASIC4.78□□□□□ -1.64
LIMCH1Q9UPQ0 MTND1P4-201ENST00000435196 415 ntBASIC4.78□□□□□ -1.64
LIMCH1Q9UPQ0 AL356276.2-201ENST00000435919 558 ntBASIC4.78□□□□□ -1.64
LIMCH1Q9UPQ0 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC4.78□□□□□ -1.64
LIMCH1Q9UPQ0 AL031667.1-201ENST00000440222 725 ntBASIC4.78□□□□□ -1.64
LIMCH1Q9UPQ0 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC4.78□□□□□ -1.64
LIMCH1Q9UPQ0 Z82190.1-201ENST00000454534 490 ntBASIC4.78□□□□□ -1.64
LIMCH1Q9UPQ0 FGF7P3-201ENST00000454645 303 ntBASIC4.78□□□□□ -1.64
LIMCH1Q9UPQ0 BTF3P5-201ENST00000457252 467 ntBASIC4.78□□□□□ -1.64
LIMCH1Q9UPQ0 MTCO1P42-201ENST00000457379 726 ntBASIC4.78□□□□□ -1.64
LIMCH1Q9UPQ0 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC4.78□□□□□ -1.64
LIMCH1Q9UPQ0 TMED11P-201ENST00000479478 690 ntBASIC4.78□□□□□ -1.64
LIMCH1Q9UPQ0 AC093267.1-201ENST00000489176 961 ntBASIC4.78□□□□□ -1.64
LIMCH1Q9UPQ0 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC4.78□□□□□ -1.64
LIMCH1Q9UPQ0 RPS23P1-201ENST00000491662 432 ntBASIC4.78□□□□□ -1.64
LIMCH1Q9UPQ0 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC4.78□□□□□ -1.64
LIMCH1Q9UPQ0 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC4.78□□□□□ -1.64
LIMCH1Q9UPQ0 AC068446.3-201ENST00000555285 382 ntBASIC4.78□□□□□ -1.64
LIMCH1Q9UPQ0 AC009063.1-201ENST00000563342 702 ntBASIC4.78□□□□□ -1.64
LIMCH1Q9UPQ0 AC136619.2-201ENST00000563361 631 ntBASIC4.78□□□□□ -1.64
LIMCH1Q9UPQ0 AC137800.2-201ENST00000574375 120 ntBASIC4.78□□□□□ -1.64
LIMCH1Q9UPQ0 AC025627.2-201ENST00000576220 160 ntBASIC4.78□□□□□ -1.64
LIMCH1Q9UPQ0 AC090615.1-201ENST00000577519 154 ntBASIC4.78□□□□□ -1.64
LIMCH1Q9UPQ0 MIR3682-201ENST00000581338 84 ntBASIC4.78□□□□□ -1.64
LIMCH1Q9UPQ0 AC108747.1-201ENST00000609508 535 ntBASIC4.78□□□□□ -1.64
LIMCH1Q9UPQ0 U6atac.1-201ENST00000616025 117 ntBASIC4.78□□□□□ -1.64
LIMCH1Q9UPQ0 AC104010.1-201ENST00000616889 150 ntBASIC4.78□□□□□ -1.64
LIMCH1Q9UPQ0 RN7SL722P-201ENST00000617780 284 ntBASIC4.78□□□□□ -1.64
LIMCH1Q9UPQ0 RN7SL565P-201ENST00000618246 284 ntBASIC4.78□□□□□ -1.64
LIMCH1Q9UPQ0 AC103858.2-201ENST00000621471 543 ntBASIC4.78□□□□□ -1.64
LIMCH1Q9UPQ0 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC4.78□□□□□ -1.64
LIMCH1Q9UPQ0 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
LIMCH1Q9UPQ0 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
LIMCH1Q9UPQ0 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC4.78□□□□□ -1.64
LIMCH1Q9UPQ0 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
LIMCH1Q9UPQ0 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
LIMCH1Q9UPQ0 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC4.78□□□□□ -1.64
LIMCH1Q9UPQ0 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 CCT4P2-201ENST00000233836 1548 ntBASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 Y_RNA.41-201ENST00000362646 102 ntBASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 RAD23BP2-201ENST00000416003 1207 ntBASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 AL138785.1-201ENST00000425821 331 ntBASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 GCA-203ENST00000429691 824 ntTSL 3 BASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 MTATP6P13-201ENST00000438531 667 ntBASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 AC073614.1-201ENST00000438690 650 ntBASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 RPL22P17-201ENST00000438729 315 ntBASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 RABEPKP1-201ENST00000440529 1026 ntBASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 ACTR3P3-201ENST00000480448 893 ntBASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 AC091167.1-201ENST00000492017 396 ntBASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 AC108475.1-201ENST00000507880 950 ntBASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 NDUFB4P2-201ENST00000509515 391 ntBASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 AC093853.1-201ENST00000515689 483 ntBASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 AP003467.2-201ENST00000520175 319 ntBASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 106.5 ms