Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AC006213.4-201ENST00000616184 634 ntBASIC3.37□□□□□ -1.87
DDX28Q9NUL7 AC073530.2-201ENST00000623987 261 ntBASIC3.37□□□□□ -1.87
DDX28Q9NUL7 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.37□□□□□ -1.87
DDX28Q9NUL7 AL513302.2-201ENST00000562313 1842 ntBASIC3.37□□□□□ -1.87
DDX28Q9NUL7 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
DDX28Q9NUL7 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
DDX28Q9NUL7 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.36□□□□□ -1.87
DDX28Q9NUL7 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
DDX28Q9NUL7 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.36□□□□□ -1.87
DDX28Q9NUL7 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.36□□□□□ -1.87
DDX28Q9NUL7 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
DDX28Q9NUL7 RNA5SP97-201ENST00000365006 84 ntBASIC3.36□□□□□ -1.87
DDX28Q9NUL7 SNORD116.1-201ENST00000365628 92 ntBASIC3.36□□□□□ -1.87
DDX28Q9NUL7 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.36□□□□□ -1.87
DDX28Q9NUL7 SNORD51-201ENST00000384320 80 ntBASIC3.36□□□□□ -1.87
DDX28Q9NUL7 RNU6-906P-201ENST00000384700 70 ntBASIC3.36□□□□□ -1.87
DDX28Q9NUL7 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC3.36□□□□□ -1.87
DDX28Q9NUL7 RNU6-712P-201ENST00000410558 100 ntBASIC3.36□□□□□ -1.87
DDX28Q9NUL7 RNU2-71P-201ENST00000411395 189 ntBASIC3.36□□□□□ -1.87
DDX28Q9NUL7 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
DDX28Q9NUL7 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC3.36□□□□□ -1.87
DDX28Q9NUL7 TRGVB-201ENST00000453257 471 ntBASIC3.36□□□□□ -1.87
DDX28Q9NUL7 RPL18AP17-201ENST00000455326 198 ntBASIC3.36□□□□□ -1.87
DDX28Q9NUL7 RPL21P104-201ENST00000464143 478 ntBASIC3.36□□□□□ -1.87
DDX28Q9NUL7 RN7SL442P-201ENST00000473804 320 ntBASIC3.36□□□□□ -1.87
DDX28Q9NUL7 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC3.36□□□□□ -1.87
DDX28Q9NUL7 SETP14-201ENST00000497538 873 ntBASIC3.36□□□□□ -1.87
DDX28Q9NUL7 AC114981.1-201ENST00000503897 678 ntBASIC3.36□□□□□ -1.87
DDX28Q9NUL7 AC006390.1-201ENST00000508068 283 ntBASIC3.36□□□□□ -1.87
DDX28Q9NUL7 RNU6-583P-201ENST00000516012 92 ntBASIC3.36□□□□□ -1.87
DDX28Q9NUL7 RNA5SP164-201ENST00000516533 110 ntBASIC3.36□□□□□ -1.87
DDX28Q9NUL7 RN7SKP209-201ENST00000516888 304 ntBASIC3.36□□□□□ -1.87
DDX28Q9NUL7 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.36□□□□□ -1.87
DDX28Q9NUL7 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC3.36□□□□□ -1.87
DDX28Q9NUL7 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC3.36□□□□□ -1.87
DDX28Q9NUL7 REXO2-218ENST00000544827 880 ntTSL 3 BASIC3.36□□□□□ -1.87
DDX28Q9NUL7 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
DDX28Q9NUL7 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC3.36□□□□□ -1.87
DDX28Q9NUL7 AC120057.2-201ENST00000571520 271 ntBASIC3.36□□□□□ -1.87
DDX28Q9NUL7 AC005951.1-201ENST00000576706 485 ntBASIC3.36□□□□□ -1.87
DDX28Q9NUL7 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC3.36□□□□□ -1.87
DDX28Q9NUL7 DUXAP3-201ENST00000603616 594 ntBASIC3.36□□□□□ -1.87
DDX28Q9NUL7 AC010738.1-201ENST00000604970 987 ntBASIC3.36□□□□□ -1.87
DDX28Q9NUL7 AC243773.3-201ENST00000613270 256 ntBASIC3.36□□□□□ -1.87
DDX28Q9NUL7 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC3.36□□□□□ -1.87
DDX28Q9NUL7 PACRG-211ENST00000621363 360 ntTSL 5 BASIC3.36□□□□□ -1.87
DDX28Q9NUL7 MIR6500-201ENST00000622700 86 ntBASIC3.36□□□□□ -1.87
DDX28Q9NUL7 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC3.36□□□□□ -1.87
DDX28Q9NUL7 AC090897.3-201ENST00000636973 1157 ntBASIC3.36□□□□□ -1.87
DDX28Q9NUL7 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
DDX28Q9NUL7 AL049780.3-201ENST00000624612 1583 ntBASIC3.36□□□□□ -1.87
DDX28Q9NUL7 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC3.36□□□□□ -1.87
DDX28Q9NUL7 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.36□□□□□ -1.87
DDX28Q9NUL7 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
DDX28Q9NUL7 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC3.35□□□□□ -1.87
DDX28Q9NUL7 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.35□□□□□ -1.87
DDX28Q9NUL7 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
DDX28Q9NUL7 Y_RNA.465-201ENST00000384293 102 ntBASIC3.35□□□□□ -1.87
DDX28Q9NUL7 RNU6-636P-201ENST00000384598 107 ntBASIC3.35□□□□□ -1.87
DDX28Q9NUL7 AL136116.1-201ENST00000403591 381 ntBASIC3.35□□□□□ -1.87
DDX28Q9NUL7 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.35□□□□□ -1.87
DDX28Q9NUL7 TIMM9P2-201ENST00000419324 266 ntBASIC3.35□□□□□ -1.87
DDX28Q9NUL7 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC3.35□□□□□ -1.87
DDX28Q9NUL7 AC018644.1-201ENST00000429934 551 ntBASIC3.35□□□□□ -1.87
DDX28Q9NUL7 AL158071.1-201ENST00000430315 461 ntBASIC3.35□□□□□ -1.87
DDX28Q9NUL7 MTND2P5-201ENST00000432656 1006 ntBASIC3.35□□□□□ -1.87
DDX28Q9NUL7 AL035246.1-201ENST00000433554 1255 ntBASIC3.35□□□□□ -1.87
DDX28Q9NUL7 Z74696.2-201ENST00000436514 498 ntBASIC3.35□□□□□ -1.87
DDX28Q9NUL7 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC3.35□□□□□ -1.87
DDX28Q9NUL7 MTND4P6-201ENST00000438297 472 ntBASIC3.35□□□□□ -1.87
DDX28Q9NUL7 MTND2P19-201ENST00000449129 1012 ntBASIC3.35□□□□□ -1.87
DDX28Q9NUL7 SUMO2P2-201ENST00000456482 255 ntBASIC3.35□□□□□ -1.87
DDX28Q9NUL7 ANK3-207ENST00000460468 677 ntTSL 3 BASIC3.35□□□□□ -1.87
DDX28Q9NUL7 RPS27P29-201ENST00000463110 252 ntBASIC3.35□□□□□ -1.87
DDX28Q9NUL7 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
DDX28Q9NUL7 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.35□□□□□ -1.87
DDX28Q9NUL7 RPL7P38-201ENST00000488396 739 ntBASIC3.35□□□□□ -1.87
DDX28Q9NUL7 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC3.35□□□□□ -1.87
DDX28Q9NUL7 AC090453.1-201ENST00000495560 436 ntBASIC3.35□□□□□ -1.87
DDX28Q9NUL7 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC3.35□□□□□ -1.87
DDX28Q9NUL7 MTND4LP22-201ENST00000508209 276 ntBASIC3.35□□□□□ -1.87
DDX28Q9NUL7 TXNP6-201ENST00000510190 310 ntBASIC3.35□□□□□ -1.87
DDX28Q9NUL7 PAICSP4-201ENST00000517543 1253 ntBASIC3.35□□□□□ -1.87
DDX28Q9NUL7 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC3.35□□□□□ -1.87
DDX28Q9NUL7 AC126177.3-201ENST00000551839 688 ntBASIC3.35□□□□□ -1.87
DDX28Q9NUL7 AC090695.1-201ENST00000561269 1222 ntBASIC3.35□□□□□ -1.87
DDX28Q9NUL7 HSPE1P5-201ENST00000561489 272 ntBASIC3.35□□□□□ -1.87
DDX28Q9NUL7 AC087481.2-201ENST00000565492 330 ntBASIC3.35□□□□□ -1.87
DDX28Q9NUL7 OR4K7P-201ENST00000580232 945 ntBASIC3.35□□□□□ -1.87
DDX28Q9NUL7 MIR4444-1-201ENST00000581696 74 ntBASIC3.35□□□□□ -1.87
DDX28Q9NUL7 MIR4444-2-201ENST00000584390 74 ntBASIC3.35□□□□□ -1.87
DDX28Q9NUL7 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC3.35□□□□□ -1.87
DDX28Q9NUL7 AC107075.1-201ENST00000613695 314 ntBASIC3.35□□□□□ -1.87
DDX28Q9NUL7 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC3.35□□□□□ -1.87
DDX28Q9NUL7 AC069209.1-201ENST00000619282 651 ntBASIC3.35□□□□□ -1.87
DDX28Q9NUL7 CR392039.5-201ENST00000623201 510 ntBASIC3.35□□□□□ -1.87
DDX28Q9NUL7 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3.35□□□□□ -1.87
DDX28Q9NUL7 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC3.35□□□□□ -1.87
DDX28Q9NUL7 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.35□□□□□ -1.87
DDX28Q9NUL7 AP002907.1-201ENST00000606361 1430 ntBASIC3.35□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 98.5 ms