Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC109458.1-201ENST00000508858 316 ntBASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 MTND1P22-201ENST00000510572 951 ntBASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 AC005798.1-201ENST00000513715 387 ntBASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 AC010342.1-201ENST00000514047 877 ntBASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 RN7SKP13-201ENST00000515933 244 ntBASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 RNU6-1129P-201ENST00000515964 104 ntBASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 SNORA74D-201ENST00000516404 141 ntBASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 SUMO2P20-201ENST00000520803 283 ntBASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 OR6C73P-201ENST00000546432 358 ntBASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 AL121766.1-201ENST00000547436 487 ntBASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 AC006270.2-201ENST00000578523 652 ntBASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 AC020914.6-201ENST00000594327 272 ntBASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 AC006270.3-201ENST00000605967 1036 ntBASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 AP003485.2-201ENST00000623636 610 ntBASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 AC091905.1-201ENST00000624400 311 ntBASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 AC017037.3-201ENST00000625016 472 ntBASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 CR381572.1-201ENST00000625098 102 ntBASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 U6.101-201ENST00000637707 76 ntBASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 AL391994.1-201ENST00000254724 282 ntBASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 RNU6-339P-201ENST00000384310 107 ntBASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 RPL23AP29-201ENST00000397284 453 ntBASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 RN7SKP56-201ENST00000410513 331 ntBASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 RAP1BP1-201ENST00000412709 553 ntBASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 AL953862.1-201ENST00000423016 168 ntBASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 SGO1P2-201ENST00000429458 1589 ntBASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 EZH2P1-201ENST00000431167 291 ntBASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 CETN4P-201ENST00000432407 469 ntBASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 MTND5P24-201ENST00000438892 1767 ntBASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 AC092641.1-201ENST00000440229 772 ntBASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 MTCYBP3-201ENST00000445588 1137 ntBASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 AL109741.2-201ENST00000455561 343 ntBASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 snoU13.3-201ENST00000459441 104 ntBASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 AC097493.1-201ENST00000463958 372 ntBASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 AC090453.1-201ENST00000495560 436 ntBASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 NUP58P1-201ENST00000502546 1738 ntBASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 DSTNP2-201ENST00000504533 515 ntBASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 AC004069.2-201ENST00000505438 1114 ntBASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 AC026427.2-201ENST00000506228 536 ntBASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 NDUFB4P9-201ENST00000511646 388 ntBASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 SNORA70.14-201ENST00000516205 110 ntBASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 OR5BR1P-201ENST00000524992 1330 ntBASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 MRPS36P5-201ENST00000551909 298 ntBASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 AC145350.1-201ENST00000567426 208 ntBASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 AC009101.1-201ENST00000568135 242 ntBASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 MIR3200-201ENST00000580767 85 ntBASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 AL031281.1-201ENST00000604049 488 ntBASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 AC090116.1-201ENST00000615679 446 ntBASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 AC073968.1-201ENST00000618594 637 ntBASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 91.1 ms