Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
ZNF540Q8NDQ6 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC3.31□□□□□ -1.88
ZNF540Q8NDQ6 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
ZNF540Q8NDQ6 AC015726.1-201ENST00000602353 681 ntBASIC3.31□□□□□ -1.88
ZNF540Q8NDQ6 AC079089.3-201ENST00000603094 673 ntBASIC3.31□□□□□ -1.88
ZNF540Q8NDQ6 AC006557.5-201ENST00000603126 811 ntBASIC3.31□□□□□ -1.88
ZNF540Q8NDQ6 AC013444.2-201ENST00000603317 787 ntBASIC3.31□□□□□ -1.88
ZNF540Q8NDQ6 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
ZNF540Q8NDQ6 AC022149.2-201ENST00000621061 203 ntBASIC3.31□□□□□ -1.88
ZNF540Q8NDQ6 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC3.31□□□□□ -1.88
ZNF540Q8NDQ6 AP000676.4-201ENST00000624659 623 ntBASIC3.31□□□□□ -1.88
ZNF540Q8NDQ6 AC007656.2-201ENST00000624902 4547 ntBASIC3.31□□□□□ -1.88
ZNF540Q8NDQ6 AC099654.7-201ENST00000635788 2127 ntBASIC3.31□□□□□ -1.88
ZNF540Q8NDQ6 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
ZNF540Q8NDQ6 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 RNA5SP171-201ENST00000391071 115 ntBASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 RPS7P13-201ENST00000413955 498 ntBASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 BEND7P1-201ENST00000422058 457 ntBASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 DPRXP1-201ENST00000426312 460 ntBASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 AC234781.2-201ENST00000426370 994 ntBASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 PSMA6P3-201ENST00000428242 164 ntBASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 AC006946.1-201ENST00000429106 328 ntBASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 AL445584.1-201ENST00000431451 330 ntBASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 NDUFB4P6-201ENST00000436819 366 ntBASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 MRPL42P4-201ENST00000453267 443 ntBASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 USP9YP34-201ENST00000453983 808 ntBASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 SUMO2P2-201ENST00000456482 255 ntBASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 AC092757.1-201ENST00000467293 467 ntBASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 AC108860.1-201ENST00000484521 383 ntBASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 COX7A2P2-201ENST00000505291 250 ntBASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 AC010460.2-201ENST00000509054 677 ntBASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 RNU5A-7P-201ENST00000515979 116 ntBASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 RN7SKP157-201ENST00000516174 282 ntBASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 AP006245.1-201ENST00000522549 120 ntBASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 AP003102.1-201ENST00000525638 661 ntBASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 AP000926.4-201ENST00000527351 454 ntBASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 OR7K1P-201ENST00000546439 926 ntBASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 CR383656.7-201ENST00000548164 174 ntBASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 RPL23AP78-201ENST00000599928 470 ntBASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 MTATP6P2-201ENST00000603319 678 ntBASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 NUTF2P8-201ENST00000604593 363 ntBASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 AL158211.2-201ENST00000607282 395 ntBASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 AC024933.1-201ENST00000608472 348 ntBASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 AL391262.2-201ENST00000622466 494 ntBASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 AC090617.7-201ENST00000623952 126 ntBASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 AC087821.2-201ENST00000637086 450 ntBASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
ZNF540Q8NDQ6 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
ZNF540Q8NDQ6 API5P2-201ENST00000397055 1498 ntBASIC3.29□□□□□ -1.88
ZNF540Q8NDQ6 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
ZNF540Q8NDQ6 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
ZNF540Q8NDQ6 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
ZNF540Q8NDQ6 AC092638.1-201ENST00000411966 1275 ntBASIC3.29□□□□□ -1.88
ZNF540Q8NDQ6 AC068533.1-201ENST00000418542 415 ntBASIC3.29□□□□□ -1.88
ZNF540Q8NDQ6 AC027644.1-201ENST00000419595 298 ntBASIC3.29□□□□□ -1.88
ZNF540Q8NDQ6 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC3.29□□□□□ -1.88
ZNF540Q8NDQ6 MTCO2P1-201ENST00000424648 477 ntBASIC3.29□□□□□ -1.88
ZNF540Q8NDQ6 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC3.29□□□□□ -1.88
ZNF540Q8NDQ6 GCA-203ENST00000429691 824 ntTSL 3 BASIC3.29□□□□□ -1.88
ZNF540Q8NDQ6 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC3.29□□□□□ -1.88
ZNF540Q8NDQ6 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC3.29□□□□□ -1.88
ZNF540Q8NDQ6 MTND2P39-201ENST00000457230 764 ntBASIC3.29□□□□□ -1.88
ZNF540Q8NDQ6 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC3.29□□□□□ -1.88
ZNF540Q8NDQ6 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.29□□□□□ -1.88
ZNF540Q8NDQ6 TRMT10BP1-201ENST00000519377 943 ntBASIC3.29□□□□□ -1.88
ZNF540Q8NDQ6 AC004024.1-201ENST00000549244 247 ntBASIC3.29□□□□□ -1.88
ZNF540Q8NDQ6 CYB5AP5-201ENST00000549779 389 ntBASIC3.29□□□□□ -1.88
ZNF540Q8NDQ6 AC023161.2-201ENST00000551218 780 ntBASIC3.29□□□□□ -1.88
ZNF540Q8NDQ6 AL136520.1-202ENST00000555494 763 ntBASIC3.29□□□□□ -1.88
ZNF540Q8NDQ6 AC122134.1-202ENST00000569111 1201 ntBASIC3.29□□□□□ -1.88
ZNF540Q8NDQ6 MTND4LP25-201ENST00000570218 163 ntBASIC3.29□□□□□ -1.88
ZNF540Q8NDQ6 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC3.29□□□□□ -1.88
ZNF540Q8NDQ6 MIR3609-201ENST00000582661 80 ntBASIC3.29□□□□□ -1.88
ZNF540Q8NDQ6 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC3.29□□□□□ -1.88
ZNF540Q8NDQ6 AC008507.1-201ENST00000587506 734 ntBASIC3.29□□□□□ -1.88
ZNF540Q8NDQ6 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms