Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 RPL39P36-201ENST00000490784 156 ntBASIC3.95□□□□□ -1.78
HOXA4Q00056 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC3.95□□□□□ -1.78
HOXA4Q00056 AC231760.1-201ENST00000498002 260 ntBASIC3.95□□□□□ -1.78
HOXA4Q00056 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC3.95□□□□□ -1.78
HOXA4Q00056 ACTR3BP4-201ENST00000503033 1244 ntBASIC3.95□□□□□ -1.78
HOXA4Q00056 AC005798.1-201ENST00000513715 387 ntBASIC3.95□□□□□ -1.78
HOXA4Q00056 RN7SKP277-201ENST00000516895 283 ntBASIC3.95□□□□□ -1.78
HOXA4Q00056 Y_RNA.719-201ENST00000517156 106 ntBASIC3.95□□□□□ -1.78
HOXA4Q00056 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC3.95□□□□□ -1.78
HOXA4Q00056 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC3.95□□□□□ -1.78
HOXA4Q00056 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC3.95□□□□□ -1.78
HOXA4Q00056 EDDM3DP-201ENST00000554692 434 ntBASIC3.95□□□□□ -1.78
HOXA4Q00056 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC3.95□□□□□ -1.78
HOXA4Q00056 RN7SL652P-201ENST00000577769 300 ntBASIC3.95□□□□□ -1.78
HOXA4Q00056 MIR4716-201ENST00000579628 84 ntBASIC3.95□□□□□ -1.78
HOXA4Q00056 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
HOXA4Q00056 MIR4270-201ENST00000581799 70 ntBASIC3.95□□□□□ -1.78
HOXA4Q00056 AC098848.2-201ENST00000588023 330 ntBASIC3.95□□□□□ -1.78
HOXA4Q00056 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC3.95□□□□□ -1.78
HOXA4Q00056 AC115621.1-201ENST00000604653 858 ntBASIC3.95□□□□□ -1.78
HOXA4Q00056 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC3.95□□□□□ -1.78
HOXA4Q00056 OR6R2P-201ENST00000609216 300 ntBASIC3.95□□□□□ -1.78
HOXA4Q00056 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC3.95□□□□□ -1.78
HOXA4Q00056 AL590099.1-201ENST00000615276 138 ntBASIC3.95□□□□□ -1.78
HOXA4Q00056 uc_338.18-201ENST00000615451 175 ntBASIC3.95□□□□□ -1.78
HOXA4Q00056 AC022106.2-201ENST00000620114 757 ntBASIC3.95□□□□□ -1.78
HOXA4Q00056 AC024940.5-201ENST00000622889 474 ntBASIC3.95□□□□□ -1.78
HOXA4Q00056 CR381572.2-201ENST00000624852 397 ntBASIC3.95□□□□□ -1.78
HOXA4Q00056 AC091925.2-201ENST00000625059 256 ntBASIC3.95□□□□□ -1.78
HOXA4Q00056 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
HOXA4Q00056 SMG1P6-201ENST00000532337 2930 ntBASIC3.95□□□□□ -1.78
HOXA4Q00056 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC3.95□□□□□ -1.78
HOXA4Q00056 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
HOXA4Q00056 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
HOXA4Q00056 SAGE4P-201ENST00000442271 3381 ntBASIC3.95□□□□□ -1.78
HOXA4Q00056 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
HOXA4Q00056 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC3.95□□□□□ -1.78
HOXA4Q00056 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC3.95□□□□□ -1.78
HOXA4Q00056 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC3.95□□□□□ -1.78
HOXA4Q00056 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC3.95□□□□□ -1.78
HOXA4Q00056 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC3.94□□□□□ -1.78
HOXA4Q00056 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC3.94□□□□□ -1.78
HOXA4Q00056 ST7-212ENST00000422922 1887 ntTSL 5 BASIC3.94□□□□□ -1.78
HOXA4Q00056 AC105074.1-201ENST00000623380 3095 ntBASIC3.94□□□□□ -1.78
HOXA4Q00056 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
HOXA4Q00056 AL359893.1-201ENST00000447628 1580 ntBASIC3.94□□□□□ -1.78
HOXA4Q00056 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC3.94□□□□□ -1.78
HOXA4Q00056 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC3.94□□□□□ -1.78
HOXA4Q00056 RNU6-108P-201ENST00000365558 107 ntBASIC3.94□□□□□ -1.78
HOXA4Q00056 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC3.94□□□□□ -1.78
HOXA4Q00056 AL591416.1-201ENST00000404015 867 ntBASIC3.94□□□□□ -1.78
HOXA4Q00056 AL591848.1-201ENST00000413092 322 ntBASIC3.94□□□□□ -1.78
HOXA4Q00056 MTCO3P12-201ENST00000416718 547 ntBASIC3.94□□□□□ -1.78
HOXA4Q00056 AC016831.2-201ENST00000417179 352 ntBASIC3.94□□□□□ -1.78
HOXA4Q00056 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC3.94□□□□□ -1.78
HOXA4Q00056 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC3.94□□□□□ -1.78
HOXA4Q00056 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC3.94□□□□□ -1.78
HOXA4Q00056 AL353597.2-202ENST00000434901 373 ntBASIC3.94□□□□□ -1.78
HOXA4Q00056 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC3.94□□□□□ -1.78
HOXA4Q00056 FTH1P1-201ENST00000437933 532 ntBASIC3.94□□□□□ -1.78
HOXA4Q00056 AL138799.3-201ENST00000438968 350 ntBASIC3.94□□□□□ -1.78
HOXA4Q00056 SEPT14P3-201ENST00000439401 183 ntBASIC3.94□□□□□ -1.78
HOXA4Q00056 AC016691.1-201ENST00000441321 413 ntBASIC3.94□□□□□ -1.78
HOXA4Q00056 AL732372.2-207ENST00000445840 183 ntBASIC3.94□□□□□ -1.78
HOXA4Q00056 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC3.94□□□□□ -1.78
HOXA4Q00056 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC3.94□□□□□ -1.78
HOXA4Q00056 AC002553.2-201ENST00000453217 340 ntBASIC3.94□□□□□ -1.78
HOXA4Q00056 SEPT14P2-201ENST00000453405 183 ntBASIC3.94□□□□□ -1.78
HOXA4Q00056 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC3.94□□□□□ -1.78
HOXA4Q00056 RNA5SP103-201ENST00000459503 118 ntBASIC3.94□□□□□ -1.78
HOXA4Q00056 RPS3AP50-201ENST00000487064 803 ntBASIC3.94□□□□□ -1.78
HOXA4Q00056 OR5H5P-201ENST00000503164 928 ntBASIC3.94□□□□□ -1.78
HOXA4Q00056 AC139783.2-201ENST00000504847 1145 ntBASIC3.94□□□□□ -1.78
HOXA4Q00056 MTND3P22-201ENST00000510932 243 ntBASIC3.94□□□□□ -1.78
HOXA4Q00056 SEPT14P4-201ENST00000513445 186 ntBASIC3.94□□□□□ -1.78
HOXA4Q00056 FTH1P11-201ENST00000517577 551 ntBASIC3.94□□□□□ -1.78
HOXA4Q00056 FO082796.1-201ENST00000523795 183 ntBASIC3.94□□□□□ -1.78
HOXA4Q00056 AP003072.2-201ENST00000527756 676 ntBASIC3.94□□□□□ -1.78
HOXA4Q00056 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC3.94□□□□□ -1.78
HOXA4Q00056 AL110118.1-201ENST00000553543 400 ntBASIC3.94□□□□□ -1.78
HOXA4Q00056 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC3.94□□□□□ -1.78
HOXA4Q00056 MIR3936-201ENST00000584304 110 ntBASIC3.94□□□□□ -1.78
HOXA4Q00056 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC3.94□□□□□ -1.78
HOXA4Q00056 KC877982.1-201ENST00000602313 470 ntBASIC3.94□□□□□ -1.78
HOXA4Q00056 BX323046.1-201ENST00000610145 535 ntBASIC3.94□□□□□ -1.78
HOXA4Q00056 AC006504.8-201ENST00000621046 635 ntBASIC3.94□□□□□ -1.78
HOXA4Q00056 AC093648.1-201ENST00000623546 606 ntBASIC3.94□□□□□ -1.78
HOXA4Q00056 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC3.94□□□□□ -1.78
HOXA4Q00056 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
HOXA4Q00056 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC3.94□□□□□ -1.78
HOXA4Q00056 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
HOXA4Q00056 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
HOXA4Q00056 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
HOXA4Q00056 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
HOXA4Q00056 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
HOXA4Q00056 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
HOXA4Q00056 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
HOXA4Q00056 AL136164.3-201ENST00000624429 3978 ntBASIC3.94□□□□□ -1.78
HOXA4Q00056 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
HOXA4Q00056 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 105.9 ms