Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 RAD21-204ENST00000518055 896 ntTSL 2 BASIC4.99□□□□□ -1.61
RNF4P78317 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC4.99□□□□□ -1.61
RNF4P78317 CARD16-203ENST00000525374 503 ntTSL 3 BASIC4.99□□□□□ -1.61
RNF4P78317 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC4.99□□□□□ -1.61
RNF4P78317 AL137161.1-201ENST00000532231 390 ntBASIC4.99□□□□□ -1.61
RNF4P78317 PYM1-205ENST00000547925 499 ntTSL 3 BASIC4.99□□□□□ -1.61
RNF4P78317 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC4.99□□□□□ -1.61
RNF4P78317 SETP7-201ENST00000552169 453 ntBASIC4.99□□□□□ -1.61
RNF4P78317 DNAJC8P1-201ENST00000554535 372 ntBASIC4.99□□□□□ -1.61
RNF4P78317 MIR4790-201ENST00000577799 79 ntBASIC4.99□□□□□ -1.61
RNF4P78317 RN7SL356P-201ENST00000582228 248 ntBASIC4.99□□□□□ -1.61
RNF4P78317 AC136443.5-201ENST00000603741 370 ntBASIC4.99□□□□□ -1.61
RNF4P78317 DPPA3P3-201ENST00000603842 430 ntBASIC4.99□□□□□ -1.61
RNF4P78317 AL670379.11-201ENST00000604059 253 ntBASIC4.99□□□□□ -1.61
RNF4P78317 AL670379.10-201ENST00000604330 253 ntBASIC4.99□□□□□ -1.61
RNF4P78317 AL670379.12-201ENST00000605291 253 ntBASIC4.99□□□□□ -1.61
RNF4P78317 AL670379.9-201ENST00000605428 253 ntBASIC4.99□□□□□ -1.61
RNF4P78317 AL512329.2-201ENST00000607350 548 ntBASIC4.99□□□□□ -1.61
RNF4P78317 Z82243.1-201ENST00000609432 473 ntBASIC4.99□□□□□ -1.61
RNF4P78317 AC007546.1-201ENST00000619452 559 ntBASIC4.99□□□□□ -1.61
RNF4P78317 AC244517.12-201ENST00000623581 663 ntBASIC4.99□□□□□ -1.61
RNF4P78317 AP001784.1-201ENST00000624107 428 ntBASIC4.99□□□□□ -1.61
RNF4P78317 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
RNF4P78317 OR52H1-202ENST00000641796 1061 ntBASIC4.99□□□□□ -1.61
RNF4P78317 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC4.99□□□□□ -1.61
RNF4P78317 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
RNF4P78317 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC4.99□□□□□ -1.61
RNF4P78317 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
RNF4P78317 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC4.99□□□□□ -1.61
RNF4P78317 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC4.99□□□□□ -1.61
RNF4P78317 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
RNF4P78317 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
RNF4P78317 AL359893.1-201ENST00000447628 1580 ntBASIC4.99□□□□□ -1.61
RNF4P78317 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
RNF4P78317 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC4.98□□□□□ -1.61
RNF4P78317 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
RNF4P78317 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
RNF4P78317 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC4.98□□□□□ -1.61
RNF4P78317 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
RNF4P78317 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
RNF4P78317 RPL32P3-201ENST00000359025 275 ntBASIC4.98□□□□□ -1.61
RNF4P78317 RNU6-989P-201ENST00000362756 107 ntBASIC4.98□□□□□ -1.61
RNF4P78317 Y_RNA.145-201ENST00000363527 102 ntBASIC4.98□□□□□ -1.61
RNF4P78317 Y_RNA.146-201ENST00000363549 102 ntBASIC4.98□□□□□ -1.61
RNF4P78317 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
RNF4P78317 SNORA22B-201ENST00000383876 138 ntBASIC4.98□□□□□ -1.61
RNF4P78317 HSPA8P15-201ENST00000401676 786 ntBASIC4.98□□□□□ -1.61
RNF4P78317 PPIAP9-201ENST00000403866 498 ntBASIC4.98□□□□□ -1.61
RNF4P78317 MRM2-202ENST00000407040 582 ntTSL 3 BASIC4.98□□□□□ -1.61
RNF4P78317 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC4.98□□□□□ -1.61
RNF4P78317 AC074085.1-201ENST00000413598 418 ntBASIC4.98□□□□□ -1.61
RNF4P78317 AL133482.1-201ENST00000415988 498 ntBASIC4.98□□□□□ -1.61
RNF4P78317 RPL23AP38-201ENST00000423801 469 ntBASIC4.98□□□□□ -1.61
RNF4P78317 AC005517.2-201ENST00000424673 553 ntBASIC4.98□□□□□ -1.61
RNF4P78317 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC4.98□□□□□ -1.61
RNF4P78317 AC099670.2-201ENST00000435130 321 ntBASIC4.98□□□□□ -1.61
RNF4P78317 AC010655.1-201ENST00000449336 292 ntBASIC4.98□□□□□ -1.61
RNF4P78317 AC007967.1-201ENST00000455422 1159 ntBASIC4.98□□□□□ -1.61
RNF4P78317 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC4.98□□□□□ -1.61
RNF4P78317 RN7SL197P-201ENST00000466981 299 ntBASIC4.98□□□□□ -1.61
RNF4P78317 RN7SL177P-201ENST00000476596 299 ntBASIC4.98□□□□□ -1.61
RNF4P78317 RPL7P43-201ENST00000478876 753 ntBASIC4.98□□□□□ -1.61
RNF4P78317 RPL7P42-201ENST00000481005 679 ntBASIC4.98□□□□□ -1.61
RNF4P78317 RPS21P4-201ENST00000487122 248 ntBASIC4.98□□□□□ -1.61
RNF4P78317 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC4.98□□□□□ -1.61
RNF4P78317 AC108078.2-201ENST00000510750 236 ntBASIC4.98□□□□□ -1.61
RNF4P78317 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC4.98□□□□□ -1.61
RNF4P78317 RN7SKP24-201ENST00000515888 284 ntBASIC4.98□□□□□ -1.61
RNF4P78317 RNU6-1092P-201ENST00000516955 87 ntBASIC4.98□□□□□ -1.61
RNF4P78317 SCARNA20.4-201ENST00000516969 131 ntBASIC4.98□□□□□ -1.61
RNF4P78317 DEFB108D-201ENST00000527787 222 ntBASIC4.98□□□□□ -1.61
RNF4P78317 AP000873.2-203ENST00000528524 549 ntTSL 2 BASIC4.98□□□□□ -1.61
RNF4P78317 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC4.98□□□□□ -1.61
RNF4P78317 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC4.98□□□□□ -1.61
RNF4P78317 MIR1269B-201ENST00000580405 75 ntBASIC4.98□□□□□ -1.61
RNF4P78317 AC233702.9-201ENST00000581528 203 ntBASIC4.98□□□□□ -1.61
RNF4P78317 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC4.98□□□□□ -1.61
RNF4P78317 AC022893.3-201ENST00000607665 437 ntBASIC4.98□□□□□ -1.61
RNF4P78317 AC019193.3-201ENST00000609144 554 ntBASIC4.98□□□□□ -1.61
RNF4P78317 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC4.98□□□□□ -1.61
RNF4P78317 AP001486.3-201ENST00000615334 372 ntBASIC4.98□□□□□ -1.61
RNF4P78317 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC4.98□□□□□ -1.61
RNF4P78317 AC007823.1-201ENST00000569932 1566 ntBASIC4.98□□□□□ -1.61
RNF4P78317 NRK-204ENST00000540278 1687 ntTSL 2 BASIC4.98□□□□□ -1.61
RNF4P78317 API5-210ENST00000534600 1760 ntTSL 5 BASIC4.98□□□□□ -1.61
RNF4P78317 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
RNF4P78317 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC4.98□□□□□ -1.61
RNF4P78317 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC4.98□□□□□ -1.61
RNF4P78317 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
RNF4P78317 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
RNF4P78317 AL445437.1-201ENST00000623157 3087 ntBASIC4.98□□□□□ -1.61
RNF4P78317 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC4.98□□□□□ -1.61
RNF4P78317 AC090229.1-201ENST00000590983 1609 ntBASIC4.97□□□□□ -1.61
RNF4P78317 USP44-208ENST00000552440 1818 ntTSL 5 BASIC4.97□□□□□ -1.61
RNF4P78317 AC100757.1-201ENST00000616872 1835 ntBASIC4.97□□□□□ -1.61
RNF4P78317 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC4.97□□□□□ -1.61
RNF4P78317 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
RNF4P78317 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
RNF4P78317 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
RNF4P78317 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC4.97□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 86.7 ms