Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC2.76□□□□□ -1.97
NUP98P52948 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
NUP98P52948 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
NUP98P52948 Y_RNA.62-201ENST00000362840 99 ntBASIC2.76□□□□□ -1.97
NUP98P52948 MIR142-201ENST00000384835 87 ntBASIC2.76□□□□□ -1.97
NUP98P52948 RPL31P52-201ENST00000407532 367 ntBASIC2.76□□□□□ -1.97
NUP98P52948 RN7SKP123-201ENST00000410732 291 ntBASIC2.76□□□□□ -1.97
NUP98P52948 AC009468.1-201ENST00000412800 437 ntTSL 3 BASIC2.76□□□□□ -1.97
NUP98P52948 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC2.76□□□□□ -1.97
NUP98P52948 AC078814.3-201ENST00000553036 491 ntBASIC2.76□□□□□ -1.97
NUP98P52948 AC135628.1-201ENST00000568867 534 ntBASIC2.76□□□□□ -1.97
NUP98P52948 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC2.76□□□□□ -1.97
NUP98P52948 AC006254.3-201ENST00000603353 884 ntBASIC2.76□□□□□ -1.97
NUP98P52948 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.76□□□□□ -1.97
NUP98P52948 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC2.75□□□□□ -1.97
NUP98P52948 SNORD6-201ENST00000365444 73 ntBASIC2.75□□□□□ -1.97
NUP98P52948 MIR221-201ENST00000385135 110 ntBASIC2.75□□□□□ -1.97
NUP98P52948 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC2.75□□□□□ -1.97
NUP98P52948 AC092427.1-202ENST00000430569 476 ntBASIC2.75□□□□□ -1.97
NUP98P52948 TRAPPC2P9-201ENST00000434556 343 ntBASIC2.75□□□□□ -1.97
NUP98P52948 USP9YP7-201ENST00000436723 430 ntBASIC2.75□□□□□ -1.97
NUP98P52948 NPM1P49-201ENST00000448027 714 ntBASIC2.75□□□□□ -1.97
NUP98P52948 USP9YP32-201ENST00000452432 430 ntBASIC2.75□□□□□ -1.97
NUP98P52948 SNORD108-201ENST00000459332 71 ntBASIC2.75□□□□□ -1.97
NUP98P52948 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC2.75□□□□□ -1.97
NUP98P52948 ABI1P1-201ENST00000603375 1120 ntBASIC2.75□□□□□ -1.97
NUP98P52948 C2orf27A-204ENST00000623058 969 ntBASIC2.75□□□□□ -1.97
NUP98P52948 AL139811.1-201ENST00000424779 2299 ntBASIC2.75□□□□□ -1.97
NUP98P52948 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
NUP98P52948 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.75□□□□□ -1.97
NUP98P52948 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
NUP98P52948 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC2.75□□□□□ -1.97
NUP98P52948 RNU6-532P-201ENST00000384318 107 ntBASIC2.75□□□□□ -1.97
NUP98P52948 HSPE1P26-201ENST00000405341 275 ntBASIC2.75□□□□□ -1.97
NUP98P52948 RNU2-2P-201ENST00000410396 191 ntBASIC2.75□□□□□ -1.97
NUP98P52948 AC048351.1-201ENST00000420064 602 ntBASIC2.75□□□□□ -1.97
NUP98P52948 PTP4A1P7-201ENST00000423476 514 ntBASIC2.75□□□□□ -1.97
NUP98P52948 CALM1P2-201ENST00000452941 448 ntBASIC2.75□□□□□ -1.97
NUP98P52948 MTCO3P11-201ENST00000455103 774 ntBASIC2.75□□□□□ -1.97
NUP98P52948 AP001086.1-201ENST00000494882 321 ntBASIC2.75□□□□□ -1.97
NUP98P52948 NDUFB4P9-201ENST00000511646 388 ntBASIC2.75□□□□□ -1.97
NUP98P52948 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC2.75□□□□□ -1.97
NUP98P52948 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.75□□□□□ -1.97
NUP98P52948 AC023043.3-201ENST00000593113 385 ntBASIC2.75□□□□□ -1.97
NUP98P52948 AC083899.3-201ENST00000603413 594 ntBASIC2.75□□□□□ -1.97
NUP98P52948 U2.15-201ENST00000611544 191 ntBASIC2.75□□□□□ -1.97
NUP98P52948 U2.16-201ENST00000613119 191 ntBASIC2.75□□□□□ -1.97
NUP98P52948 U2.12-201ENST00000613778 191 ntBASIC2.75□□□□□ -1.97
NUP98P52948 U2.20-201ENST00000613956 192 ntBASIC2.75□□□□□ -1.97
NUP98P52948 U2.9-201ENST00000615427 191 ntBASIC2.75□□□□□ -1.97
NUP98P52948 U2.11-201ENST00000616345 191 ntBASIC2.75□□□□□ -1.97
NUP98P52948 U2.2-201ENST00000616535 191 ntBASIC2.75□□□□□ -1.97
NUP98P52948 U2.3-201ENST00000617785 191 ntBASIC2.75□□□□□ -1.97
NUP98P52948 U2.19-201ENST00000618602 191 ntBASIC2.75□□□□□ -1.97
NUP98P52948 RNU2-1-201ENST00000618664 191 ntBASIC2.75□□□□□ -1.97
NUP98P52948 U2.6-201ENST00000619225 191 ntBASIC2.75□□□□□ -1.97
NUP98P52948 U2.5-201ENST00000619465 191 ntBASIC2.75□□□□□ -1.97
NUP98P52948 U2.10-201ENST00000620268 191 ntBASIC2.75□□□□□ -1.97
NUP98P52948 CYP3A51P-201ENST00000633513 256 ntBASIC2.75□□□□□ -1.97
NUP98P52948 ATM-230ENST00000640388 578 ntTSL 5 BASIC2.75□□□□□ -1.97
NUP98P52948 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC2.74□□□□□ -1.97
NUP98P52948 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC2.74□□□□□ -1.97
NUP98P52948 DCAF13P1-201ENST00000495256 1330 ntBASIC2.74□□□□□ -1.97
NUP98P52948 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.74□□□□□ -1.97
NUP98P52948 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC2.74□□□□□ -1.97
NUP98P52948 RNU1-51P-201ENST00000365345 176 ntBASIC2.74□□□□□ -1.97
NUP98P52948 RNA5SP88-201ENST00000365560 109 ntBASIC2.74□□□□□ -1.97
NUP98P52948 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC2.74□□□□□ -1.97
NUP98P52948 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC2.74□□□□□ -1.97
NUP98P52948 AC092436.1-201ENST00000506450 503 ntBASIC2.74□□□□□ -1.97
NUP98P52948 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC2.74□□□□□ -1.97
NUP98P52948 MTATP6P22-201ENST00000507369 598 ntBASIC2.74□□□□□ -1.97
NUP98P52948 SCARNA16.3-201ENST00000516595 184 ntBASIC2.74□□□□□ -1.97
NUP98P52948 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.74□□□□□ -1.97
NUP98P52948 AC010733.2-201ENST00000589496 5702 ntBASIC2.74□□□□□ -1.97
NUP98P52948 AL118496.1-201ENST00000440201 1812 ntBASIC2.73□□□□□ -1.97
NUP98P52948 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC2.73□□□□□ -1.97
NUP98P52948 OR51F1-201ENST00000380383 960 ntAPPRIS P5 BASIC2.73□□□□□ -1.97
NUP98P52948 U8.13-201ENST00000390842 128 ntBASIC2.73□□□□□ -1.97
NUP98P52948 AC098826.1-201ENST00000433943 471 ntBASIC2.73□□□□□ -1.97
NUP98P52948 LARP7P4-201ENST00000481075 878 ntBASIC2.73□□□□□ -1.97
NUP98P52948 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC2.73□□□□□ -1.97
NUP98P52948 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC2.73□□□□□ -1.97
NUP98P52948 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC2.73□□□□□ -1.97
NUP98P52948 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC2.73□□□□□ -1.97
NUP98P52948 BNIP3P10-201ENST00000605360 577 ntBASIC2.73□□□□□ -1.97
NUP98P52948 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC2.73□□□□□ -1.97
NUP98P52948 VN1R7P-201ENST00000619242 903 ntBASIC2.73□□□□□ -1.97
NUP98P52948 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC2.73□□□□□ -1.97
NUP98P52948 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.73□□□□□ -1.97
NUP98P52948 AC091152.2-201ENST00000591628 2569 ntBASIC2.73□□□□□ -1.97
NUP98P52948 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.73□□□□□ -1.97
NUP98P52948 GABPAP-201ENST00000419271 1356 ntBASIC2.73□□□□□ -1.97
NUP98P52948 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC2.72□□□□□ -1.97
NUP98P52948 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC2.72□□□□□ -1.97
NUP98P52948 RPL7P53-201ENST00000421245 739 ntBASIC2.72□□□□□ -1.97
NUP98P52948 AC092832.1-201ENST00000422934 400 ntBASIC2.72□□□□□ -1.97
NUP98P52948 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC2.72□□□□□ -1.97
NUP98P52948 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC2.72□□□□□ -1.97
NUP98P52948 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 112.8 ms