Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 RPL12P26-201ENST00000452430 487 ntBASIC4.35□□□□□ -1.71
CTCFP49711 MTND2P14-201ENST00000482139 351 ntBASIC4.35□□□□□ -1.71
CTCFP49711 RN7SL504P-201ENST00000494496 287 ntBASIC4.35□□□□□ -1.71
CTCFP49711 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC4.35□□□□□ -1.71
CTCFP49711 RNF138P1-201ENST00000502765 546 ntBASIC4.35□□□□□ -1.71
CTCFP49711 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC4.35□□□□□ -1.71
CTCFP49711 AC021146.8-201ENST00000507455 733 ntBASIC4.35□□□□□ -1.71
CTCFP49711 AC109445.1-201ENST00000512356 383 ntBASIC4.35□□□□□ -1.71
CTCFP49711 SNORA70.14-201ENST00000516205 110 ntBASIC4.35□□□□□ -1.71
CTCFP49711 RNA5SP341-201ENST00000516261 117 ntBASIC4.35□□□□□ -1.71
CTCFP49711 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
CTCFP49711 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC4.35□□□□□ -1.71
CTCFP49711 OR4A12P-201ENST00000530847 918 ntBASIC4.35□□□□□ -1.71
CTCFP49711 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC4.35□□□□□ -1.71
CTCFP49711 PDCL2P2-201ENST00000533651 189 ntBASIC4.35□□□□□ -1.71
CTCFP49711 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC4.35□□□□□ -1.71
CTCFP49711 AC090888.2-201ENST00000559765 1144 ntBASIC4.35□□□□□ -1.71
CTCFP49711 AC087465.1-201ENST00000560574 245 ntBASIC4.35□□□□□ -1.71
CTCFP49711 YWHAQP7-201ENST00000603536 658 ntBASIC4.35□□□□□ -1.71
CTCFP49711 TUSC7.1-201ENST00000610969 165 ntBASIC4.35□□□□□ -1.71
CTCFP49711 AC069209.1-201ENST00000619282 651 ntBASIC4.35□□□□□ -1.71
CTCFP49711 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC4.35□□□□□ -1.71
CTCFP49711 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC4.35□□□□□ -1.71
CTCFP49711 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
CTCFP49711 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
CTCFP49711 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC4.35□□□□□ -1.71
CTCFP49711 CDR1-202ENST00000625883 1485 ntBASIC4.35□□□□□ -1.71
CTCFP49711 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
CTCFP49711 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC4.34□□□□□ -1.71
CTCFP49711 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC4.34□□□□□ -1.71
CTCFP49711 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.71
CTCFP49711 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
CTCFP49711 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.34□□□□□ -1.71
CTCFP49711 RNU6-1214P-201ENST00000363650 109 ntBASIC4.34□□□□□ -1.71
CTCFP49711 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
CTCFP49711 RNU6-157P-201ENST00000383957 107 ntBASIC4.34□□□□□ -1.71
CTCFP49711 RNU1-89P-201ENST00000384592 164 ntBASIC4.34□□□□□ -1.71
CTCFP49711 EIF5P1-201ENST00000400019 1231 ntBASIC4.34□□□□□ -1.71
CTCFP49711 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC4.34□□□□□ -1.71
CTCFP49711 AL139421.1-201ENST00000423010 169 ntBASIC4.34□□□□□ -1.71
CTCFP49711 AC010099.3-201ENST00000423896 409 ntBASIC4.34□□□□□ -1.71
CTCFP49711 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC4.34□□□□□ -1.71
CTCFP49711 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC4.34□□□□□ -1.71
CTCFP49711 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC4.34□□□□□ -1.71
CTCFP49711 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC4.34□□□□□ -1.71
CTCFP49711 Z74696.2-201ENST00000436514 498 ntBASIC4.34□□□□□ -1.71
CTCFP49711 AC091862.1-201ENST00000438016 1100 ntBASIC4.34□□□□□ -1.71
CTCFP49711 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC4.34□□□□□ -1.71
CTCFP49711 AL590399.6-201ENST00000446396 307 ntBASIC4.34□□□□□ -1.71
CTCFP49711 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC4.34□□□□□ -1.71
CTCFP49711 RSL24D1P3-201ENST00000449255 495 ntBASIC4.34□□□□□ -1.71
CTCFP49711 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC4.34□□□□□ -1.71
CTCFP49711 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC4.34□□□□□ -1.71
CTCFP49711 AC010301.1-201ENST00000473936 355 ntBASIC4.34□□□□□ -1.71
CTCFP49711 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC4.34□□□□□ -1.71
CTCFP49711 AC078817.1-201ENST00000492623 435 ntBASIC4.34□□□□□ -1.71
CTCFP49711 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC4.34□□□□□ -1.71
CTCFP49711 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC4.34□□□□□ -1.71
CTCFP49711 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC4.34□□□□□ -1.71
CTCFP49711 ZNF705CP-201ENST00000530515 889 ntBASIC4.34□□□□□ -1.71
CTCFP49711 DUXAP6-201ENST00000553858 601 ntBASIC4.34□□□□□ -1.71
CTCFP49711 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC4.34□□□□□ -1.71
CTCFP49711 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC4.34□□□□□ -1.71
CTCFP49711 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC4.34□□□□□ -1.71
CTCFP49711 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC4.34□□□□□ -1.71
CTCFP49711 AC121761.2-201ENST00000617300 689 ntBASIC4.34□□□□□ -1.71
CTCFP49711 MIR7702-201ENST00000621931 59 ntBASIC4.34□□□□□ -1.71
CTCFP49711 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
CTCFP49711 AC118273.1-201ENST00000525324 3006 ntBASIC4.34□□□□□ -1.72
CTCFP49711 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC4.34□□□□□ -1.72
CTCFP49711 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
CTCFP49711 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC4.34□□□□□ -1.72
CTCFP49711 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC4.33□□□□□ -1.72
CTCFP49711 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CTCFP49711 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CTCFP49711 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CTCFP49711 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CTCFP49711 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
CTCFP49711 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
CTCFP49711 SNORD9-201ENST00000362566 104 ntBASIC4.33□□□□□ -1.72
CTCFP49711 SNORA48.8-201ENST00000391324 134 ntBASIC4.33□□□□□ -1.72
CTCFP49711 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CTCFP49711 AL138878.1-201ENST00000405131 347 ntBASIC4.33□□□□□ -1.72
CTCFP49711 AL023807.1-201ENST00000407932 359 ntBASIC4.33□□□□□ -1.72
CTCFP49711 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC4.33□□□□□ -1.72
CTCFP49711 AL133384.1-201ENST00000412744 351 ntBASIC4.33□□□□□ -1.72
CTCFP49711 RPL7AP73-201ENST00000413490 353 ntBASIC4.33□□□□□ -1.72
CTCFP49711 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC4.33□□□□□ -1.72
CTCFP49711 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC4.33□□□□□ -1.72
CTCFP49711 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC4.33□□□□□ -1.72
CTCFP49711 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC4.33□□□□□ -1.72
CTCFP49711 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC4.33□□□□□ -1.72
CTCFP49711 AL121890.1-201ENST00000435457 205 ntBASIC4.33□□□□□ -1.72
CTCFP49711 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC4.33□□□□□ -1.72
CTCFP49711 SLC31A1P1-201ENST00000451221 567 ntBASIC4.33□□□□□ -1.72
CTCFP49711 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC4.33□□□□□ -1.72
CTCFP49711 AC080014.1-201ENST00000496877 1201 ntBASIC4.33□□□□□ -1.72
CTCFP49711 AC068305.1-201ENST00000497406 726 ntBASIC4.33□□□□□ -1.72
CTCFP49711 OR2A20P-203ENST00000498397 1268 ntBASIC4.33□□□□□ -1.72
CTCFP49711 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 425.3 ms