Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC011492.1-201ENST00000600023 315 ntBASIC3.15□□□□□ -1.91
BRCA1P38398 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
BRCA1P38398 AC092184.1-201ENST00000625042 715 ntBASIC3.15□□□□□ -1.91
BRCA1P38398 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC3.15□□□□□ -1.91
BRCA1P38398 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.91
BRCA1P38398 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.15□□□□□ -1.91
BRCA1P38398 AL049737.1-201ENST00000413920 1403 ntBASIC3.15□□□□□ -1.91
BRCA1P38398 AC104454.1-201ENST00000421341 1401 ntBASIC3.15□□□□□ -1.91
BRCA1P38398 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC3.14□□□□□ -1.91
BRCA1P38398 MIR1303-201ENST00000408625 86 ntBASIC3.14□□□□□ -1.91
BRCA1P38398 AC073310.1-201ENST00000423226 1033 ntBASIC3.14□□□□□ -1.91
BRCA1P38398 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC3.14□□□□□ -1.91
BRCA1P38398 HIGD1AP2-201ENST00000446367 280 ntBASIC3.14□□□□□ -1.91
BRCA1P38398 SNX5P1-201ENST00000505757 1041 ntBASIC3.14□□□□□ -1.91
BRCA1P38398 RN7SKP277-201ENST00000516895 283 ntBASIC3.14□□□□□ -1.91
BRCA1P38398 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC3.14□□□□□ -1.91
BRCA1P38398 AL845331.3-202ENST00000562856 261 ntBASIC3.14□□□□□ -1.91
BRCA1P38398 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.14□□□□□ -1.91
BRCA1P38398 NRBF2P1-201ENST00000587407 859 ntBASIC3.14□□□□□ -1.91
BRCA1P38398 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC3.14□□□□□ -1.91
BRCA1P38398 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.14□□□□□ -1.91
BRCA1P38398 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
BRCA1P38398 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
BRCA1P38398 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
BRCA1P38398 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
BRCA1P38398 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.14□□□□□ -1.91
BRCA1P38398 AL161781.1-201ENST00000354277 403 ntBASIC3.13□□□□□ -1.91
BRCA1P38398 SNORA70E-201ENST00000384492 135 ntBASIC3.13□□□□□ -1.91
BRCA1P38398 EIF5P1-201ENST00000400019 1231 ntBASIC3.13□□□□□ -1.91
BRCA1P38398 AGR3-202ENST00000402239 563 ntTSL 2 BASIC3.13□□□□□ -1.91
BRCA1P38398 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
BRCA1P38398 RPS27P29-201ENST00000463110 252 ntBASIC3.13□□□□□ -1.91
BRCA1P38398 RPL30P9-201ENST00000465586 330 ntBASIC3.13□□□□□ -1.91
BRCA1P38398 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC3.13□□□□□ -1.91
BRCA1P38398 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC3.13□□□□□ -1.91
BRCA1P38398 RNA5SP380-201ENST00000517190 98 ntBASIC3.13□□□□□ -1.91
BRCA1P38398 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC3.13□□□□□ -1.91
BRCA1P38398 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC3.13□□□□□ -1.91
BRCA1P38398 AC091515.1-201ENST00000548110 679 ntBASIC3.13□□□□□ -1.91
BRCA1P38398 AC233266.2-201ENST00000567067 528 ntBASIC3.13□□□□□ -1.91
BRCA1P38398 AC012182.1-201ENST00000570133 895 ntBASIC3.13□□□□□ -1.91
BRCA1P38398 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC3.13□□□□□ -1.91
BRCA1P38398 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC3.13□□□□□ -1.91
BRCA1P38398 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.13□□□□□ -1.91
BRCA1P38398 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
BRCA1P38398 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC3.13□□□□□ -1.91
BRCA1P38398 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
BRCA1P38398 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC3.13□□□□□ -1.91
BRCA1P38398 SNORA31-201ENST00000362607 130 ntBASIC3.13□□□□□ -1.91
BRCA1P38398 RNU4-74P-201ENST00000411280 161 ntBASIC3.13□□□□□ -1.91
BRCA1P38398 RPL7P29-201ENST00000437151 728 ntBASIC3.13□□□□□ -1.91
BRCA1P38398 AC096638.1-201ENST00000444678 216 ntBASIC3.13□□□□□ -1.91
BRCA1P38398 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC3.13□□□□□ -1.91
BRCA1P38398 AL035407.2-201ENST00000454090 378 ntBASIC3.13□□□□□ -1.91
BRCA1P38398 HMGB1P25-201ENST00000468402 607 ntBASIC3.13□□□□□ -1.91
BRCA1P38398 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC3.13□□□□□ -1.91
BRCA1P38398 AC234781.5-201ENST00000508429 271 ntBASIC3.13□□□□□ -1.91
BRCA1P38398 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC3.13□□□□□ -1.91
BRCA1P38398 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC3.13□□□□□ -1.91
BRCA1P38398 CASC16-202ENST00000563844 610 ntTSL 3 BASIC3.13□□□□□ -1.91
BRCA1P38398 MIR3186-201ENST00000577404 85 ntBASIC3.13□□□□□ -1.91
BRCA1P38398 AC010928.3-201ENST00000587712 541 ntBASIC3.13□□□□□ -1.91
BRCA1P38398 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC3.13□□□□□ -1.91
BRCA1P38398 AC016727.1-205ENST00000605437 569 ntBASIC3.13□□□□□ -1.91
BRCA1P38398 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.13□□□□□ -1.91
BRCA1P38398 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC3.13□□□□□ -1.91
BRCA1P38398 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
BRCA1P38398 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
BRCA1P38398 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.13□□□□□ -1.91
BRCA1P38398 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
BRCA1P38398 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.13□□□□□ -1.91
BRCA1P38398 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
BRCA1P38398 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.13□□□□□ -1.91
BRCA1P38398 AC093831.2-201ENST00000624393 3427 ntBASIC3.12□□□□□ -1.91
BRCA1P38398 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
BRCA1P38398 RNA5SP99-201ENST00000364020 114 ntBASIC3.12□□□□□ -1.91
BRCA1P38398 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC3.12□□□□□ -1.91
BRCA1P38398 AC245291.1-201ENST00000419501 328 ntBASIC3.12□□□□□ -1.91
BRCA1P38398 AC006548.1-201ENST00000427470 102 ntBASIC3.12□□□□□ -1.91
BRCA1P38398 MTND4LP14-201ENST00000429447 288 ntBASIC3.12□□□□□ -1.91
BRCA1P38398 ZFAND6P1-201ENST00000434138 605 ntBASIC3.12□□□□□ -1.91
BRCA1P38398 AC025181.1-201ENST00000477507 416 ntBASIC3.12□□□□□ -1.91
BRCA1P38398 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
BRCA1P38398 AC091564.4-201ENST00000533934 2194 ntBASIC3.12□□□□□ -1.91
BRCA1P38398 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC3.12□□□□□ -1.91
BRCA1P38398 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC3.12□□□□□ -1.91
BRCA1P38398 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC3.12□□□□□ -1.91
BRCA1P38398 AP003117.2-201ENST00000606010 545 ntBASIC3.12□□□□□ -1.91
BRCA1P38398 AC005046.1-201ENST00000608515 625 ntBASIC3.12□□□□□ -1.91
BRCA1P38398 AC090115.4-201ENST00000609970 188 ntBASIC3.12□□□□□ -1.91
BRCA1P38398 CR381572.1-201ENST00000625098 102 ntBASIC3.12□□□□□ -1.91
BRCA1P38398 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC3.12□□□□□ -1.91
BRCA1P38398 AC110994.2-201ENST00000635481 492 ntBASIC3.12□□□□□ -1.91
BRCA1P38398 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
BRCA1P38398 PWAR6-201ENST00000552334 4618 ntBASIC3.12□□□□□ -1.91
BRCA1P38398 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
BRCA1P38398 RNA5SP189-201ENST00000364920 115 ntBASIC3.11□□□□□ -1.91
BRCA1P38398 U3.15-201ENST00000365398 212 ntBASIC3.11□□□□□ -1.91
BRCA1P38398 AC007064.1-201ENST00000412238 351 ntBASIC3.11□□□□□ -1.91
BRCA1P38398 AC023128.2-201ENST00000420880 1223 ntBASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms