Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC3.46□□□□□ -1.86
PTPN4P29074 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC3.46□□□□□ -1.86
PTPN4P29074 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.46□□□□□ -1.86
PTPN4P29074 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC3.46□□□□□ -1.86
PTPN4P29074 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC3.46□□□□□ -1.86
PTPN4P29074 RN7SKP13-201ENST00000515933 244 ntBASIC3.46□□□□□ -1.86
PTPN4P29074 RNU6-276P-201ENST00000516114 96 ntBASIC3.46□□□□□ -1.86
PTPN4P29074 SCARNA1-201ENST00000517138 166 ntBASIC3.46□□□□□ -1.86
PTPN4P29074 RNA5SP380-201ENST00000517190 98 ntBASIC3.46□□□□□ -1.86
PTPN4P29074 SNORA70.24-201ENST00000517233 118 ntBASIC3.46□□□□□ -1.86
PTPN4P29074 ZKSCAN7P1-201ENST00000543668 673 ntBASIC3.46□□□□□ -1.86
PTPN4P29074 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.46□□□□□ -1.86
PTPN4P29074 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC3.46□□□□□ -1.86
PTPN4P29074 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.46□□□□□ -1.86
PTPN4P29074 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC3.46□□□□□ -1.86
PTPN4P29074 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC3.46□□□□□ -1.86
PTPN4P29074 MIR4474-201ENST00000579189 78 ntBASIC3.46□□□□□ -1.86
PTPN4P29074 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC3.46□□□□□ -1.86
PTPN4P29074 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC3.46□□□□□ -1.86
PTPN4P29074 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC3.46□□□□□ -1.86
PTPN4P29074 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC3.46□□□□□ -1.86
PTPN4P29074 AP000553.6-201ENST00000641242 118 ntBASIC3.46□□□□□ -1.86
PTPN4P29074 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.46□□□□□ -1.86
PTPN4P29074 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC3.46□□□□□ -1.86
PTPN4P29074 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC3.46□□□□□ -1.86
PTPN4P29074 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
PTPN4P29074 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.46□□□□□ -1.86
PTPN4P29074 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
PTPN4P29074 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC3.45□□□□□ -1.86
PTPN4P29074 RPL7P26-201ENST00000333817 754 ntBASIC3.45□□□□□ -1.86
PTPN4P29074 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
PTPN4P29074 RNU6-525P-201ENST00000363685 104 ntBASIC3.45□□□□□ -1.86
PTPN4P29074 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC3.45□□□□□ -1.86
PTPN4P29074 MTND4LP20-201ENST00000402379 270 ntBASIC3.45□□□□□ -1.86
PTPN4P29074 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC3.45□□□□□ -1.86
PTPN4P29074 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.45□□□□□ -1.86
PTPN4P29074 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC3.45□□□□□ -1.86
PTPN4P29074 Z75741.2-201ENST00000417272 1167 ntBASIC3.45□□□□□ -1.86
PTPN4P29074 RPL23AP82-202ENST00000427528 469 ntBASIC3.45□□□□□ -1.86
PTPN4P29074 USP9YP22-201ENST00000438971 294 ntBASIC3.45□□□□□ -1.86
PTPN4P29074 HMGB3P6-201ENST00000444896 598 ntBASIC3.45□□□□□ -1.86
PTPN4P29074 AL358794.1-201ENST00000445689 381 ntBASIC3.45□□□□□ -1.86
PTPN4P29074 AC007967.1-201ENST00000455422 1159 ntBASIC3.45□□□□□ -1.86
PTPN4P29074 snoU109.3-201ENST00000459477 145 ntBASIC3.45□□□□□ -1.86
PTPN4P29074 CENPBD1P1-201ENST00000464061 469 ntBASIC3.45□□□□□ -1.86
PTPN4P29074 RPS27AP1-201ENST00000475545 471 ntBASIC3.45□□□□□ -1.86
PTPN4P29074 MTCYBP37-201ENST00000510642 1133 ntBASIC3.45□□□□□ -1.86
PTPN4P29074 AC093752.1-206ENST00000511823 336 ntBASIC3.45□□□□□ -1.86
PTPN4P29074 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC3.45□□□□□ -1.86
PTPN4P29074 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC3.45□□□□□ -1.86
PTPN4P29074 RANP9-201ENST00000519957 271 ntBASIC3.45□□□□□ -1.86
PTPN4P29074 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC3.45□□□□□ -1.86
PTPN4P29074 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC3.45□□□□□ -1.86
PTPN4P29074 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.45□□□□□ -1.86
PTPN4P29074 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.45□□□□□ -1.86
PTPN4P29074 AL163153.1-201ENST00000554223 283 ntBASIC3.45□□□□□ -1.86
PTPN4P29074 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC3.45□□□□□ -1.86
PTPN4P29074 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC3.45□□□□□ -1.86
PTPN4P29074 MIR5708-201ENST00000579723 85 ntBASIC3.45□□□□□ -1.86
PTPN4P29074 AC006254.3-201ENST00000603353 884 ntBASIC3.45□□□□□ -1.86
PTPN4P29074 AC069545.1-201ENST00000605671 358 ntBASIC3.45□□□□□ -1.86
PTPN4P29074 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC3.45□□□□□ -1.86
PTPN4P29074 AC104985.3-201ENST00000623479 597 ntBASIC3.45□□□□□ -1.86
PTPN4P29074 AL049781.1-201ENST00000623195 3585 ntBASIC3.45□□□□□ -1.86
PTPN4P29074 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
PTPN4P29074 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.45□□□□□ -1.86
PTPN4P29074 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.45□□□□□ -1.86
PTPN4P29074 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
PTPN4P29074 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.45□□□□□ -1.86
PTPN4P29074 SUCLA2P2-201ENST00000417269 1309 ntBASIC3.44□□□□□ -1.86
PTPN4P29074 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
PTPN4P29074 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.44□□□□□ -1.86
PTPN4P29074 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.44□□□□□ -1.86
PTPN4P29074 THUMPD3P1-201ENST00000506556 1480 ntBASIC3.44□□□□□ -1.86
PTPN4P29074 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.44□□□□□ -1.86
PTPN4P29074 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
PTPN4P29074 SNORD9-201ENST00000362566 104 ntBASIC3.44□□□□□ -1.86
PTPN4P29074 RNA5SP50-201ENST00000363731 107 ntBASIC3.44□□□□□ -1.86
PTPN4P29074 RNU4-51P-201ENST00000364206 140 ntBASIC3.44□□□□□ -1.86
PTPN4P29074 RNU6-707P-201ENST00000364647 95 ntBASIC3.44□□□□□ -1.86
PTPN4P29074 RNU6-730P-201ENST00000383954 104 ntBASIC3.44□□□□□ -1.86
PTPN4P29074 RNVU1-14-201ENST00000384770 164 ntBASIC3.44□□□□□ -1.86
PTPN4P29074 MIR491-201ENST00000384877 84 ntBASIC3.44□□□□□ -1.86
PTPN4P29074 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.44□□□□□ -1.86
PTPN4P29074 BOLA3P4-201ENST00000418151 400 ntBASIC3.44□□□□□ -1.86
PTPN4P29074 AC092634.6-201ENST00000418558 192 ntBASIC3.44□□□□□ -1.86
PTPN4P29074 AC245054.1-201ENST00000420944 258 ntBASIC3.44□□□□□ -1.86
PTPN4P29074 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC3.44□□□□□ -1.86
PTPN4P29074 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC3.44□□□□□ -1.86
PTPN4P29074 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.44□□□□□ -1.86
PTPN4P29074 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC3.44□□□□□ -1.86
PTPN4P29074 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC3.44□□□□□ -1.86
PTPN4P29074 AC010655.1-201ENST00000449336 292 ntBASIC3.44□□□□□ -1.86
PTPN4P29074 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC3.44□□□□□ -1.86
PTPN4P29074 AC012181.1-201ENST00000479895 423 ntBASIC3.44□□□□□ -1.86
PTPN4P29074 SETP14-201ENST00000497538 873 ntBASIC3.44□□□□□ -1.86
PTPN4P29074 AL358832.1-201ENST00000497800 389 ntBASIC3.44□□□□□ -1.86
PTPN4P29074 AC108078.3-201ENST00000502633 489 ntBASIC3.44□□□□□ -1.86
PTPN4P29074 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.44□□□□□ -1.86
PTPN4P29074 AC084024.2-201ENST00000503480 791 ntBASIC3.44□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 118.2 ms