Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
Scn4aQ9ER60 Mir8102-201ENSMUST00000184148 139 ntBASIC22.39■■□□□ 1.17
Scn4aQ9ER60 Mir6420-201ENSMUST00000185032 102 ntBASIC22.39■■□□□ 1.17
Scn4aQ9ER60 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC22.39■■□□□ 1.17
Scn4aQ9ER60 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Scn4aQ9ER60 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC22.39■■□□□ 1.17
Scn4aQ9ER60 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
Scn4aQ9ER60 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Scn4aQ9ER60 Myl4-203ENSMUST00000106957 943 ntAPPRIS P1 TSL 3 BASIC22.38■■□□□ 1.17
Scn4aQ9ER60 Gm15693-201ENSMUST00000120470 637 ntBASIC22.38■■□□□ 1.17
Scn4aQ9ER60 Mir7085-201ENSMUST00000184353 66 ntBASIC22.38■■□□□ 1.17
Scn4aQ9ER60 2610528J11Rik-201ENSMUST00000030261 958 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Scn4aQ9ER60 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Scn4aQ9ER60 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Scn4aQ9ER60 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC22.38■■□□□ 1.17
Scn4aQ9ER60 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Scn4aQ9ER60 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Scn4aQ9ER60 B9d1-201ENSMUST00000102657 817 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Scn4aQ9ER60 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC22.38■■□□□ 1.17
Scn4aQ9ER60 Pttg1ip-205ENSMUST00000162429 652 ntAPPRIS ALT2 TSL 2 BASIC22.38■■□□□ 1.17
Scn4aQ9ER60 Gm36967-201ENSMUST00000193814 266 ntBASIC22.38■■□□□ 1.17
Scn4aQ9ER60 Gm9899-201ENSMUST00000065519 555 ntBASIC22.38■■□□□ 1.17
Scn4aQ9ER60 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Scn4aQ9ER60 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Scn4aQ9ER60 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Scn4aQ9ER60 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Scn4aQ9ER60 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
Scn4aQ9ER60 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Scn4aQ9ER60 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC22.37■■□□□ 1.17
Scn4aQ9ER60 AC135669.1-201ENSMUST00000213585 412 ntBASIC22.37■■□□□ 1.17
Scn4aQ9ER60 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC22.37■■□□□ 1.17
Scn4aQ9ER60 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
Scn4aQ9ER60 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Scn4aQ9ER60 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC22.37■■□□□ 1.17
Scn4aQ9ER60 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
Scn4aQ9ER60 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC22.37■■□□□ 1.17
Scn4aQ9ER60 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Scn4aQ9ER60 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC22.36■■□□□ 1.17
Scn4aQ9ER60 Gm15222-201ENSMUST00000127359 344 ntTSL 3 BASIC22.36■■□□□ 1.17
Scn4aQ9ER60 4932443L11Rik-201ENSMUST00000148353 414 ntTSL 5 BASIC22.36■■□□□ 1.17
Scn4aQ9ER60 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC22.36■■□□□ 1.17
Scn4aQ9ER60 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC22.36■■□□□ 1.17
Scn4aQ9ER60 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Scn4aQ9ER60 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Scn4aQ9ER60 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Scn4aQ9ER60 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Scn4aQ9ER60 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Scn4aQ9ER60 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Scn4aQ9ER60 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC22.36■■□□□ 1.17
Scn4aQ9ER60 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
Scn4aQ9ER60 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Scn4aQ9ER60 Gm27306-201ENSMUST00000183970 107 ntBASIC22.36■■□□□ 1.17
Scn4aQ9ER60 Gm38319-201ENSMUST00000194537 1266 ntBASIC22.36■■□□□ 1.17
Scn4aQ9ER60 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Scn4aQ9ER60 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Scn4aQ9ER60 Gm4609-201ENSMUST00000106443 1002 ntBASIC22.35■■□□□ 1.17
Scn4aQ9ER60 Gm5138-201ENSMUST00000113842 1002 ntBASIC22.35■■□□□ 1.17
Scn4aQ9ER60 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
Scn4aQ9ER60 Gm15191-201ENSMUST00000117933 1000 ntBASIC22.35■■□□□ 1.17
Scn4aQ9ER60 Gm12182-201ENSMUST00000118655 1008 ntBASIC22.35■■□□□ 1.17
Scn4aQ9ER60 Gm13882-201ENSMUST00000120886 1002 ntBASIC22.35■■□□□ 1.17
Scn4aQ9ER60 Gm10284-201ENSMUST00000145057 1005 ntBASIC22.35■■□□□ 1.17
Scn4aQ9ER60 Gm15494-202ENSMUST00000171665 451 ntTSL 2 BASIC22.35■■□□□ 1.17
Scn4aQ9ER60 Gm18489-201ENSMUST00000172565 551 ntBASIC22.35■■□□□ 1.17
Scn4aQ9ER60 Gm10481-201ENSMUST00000179228 1002 ntBASIC22.35■■□□□ 1.17
Scn4aQ9ER60 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC22.35■■□□□ 1.17
Scn4aQ9ER60 Gm2574-201ENSMUST00000181051 1002 ntBASIC22.35■■□□□ 1.17
Scn4aQ9ER60 Gm3200-201ENSMUST00000181493 1002 ntBASIC22.35■■□□□ 1.17
Scn4aQ9ER60 Gm4518-201ENSMUST00000182638 718 ntBASIC22.35■■□□□ 1.17
Scn4aQ9ER60 Gm8330-201ENSMUST00000182754 1008 ntBASIC22.35■■□□□ 1.17
Scn4aQ9ER60 Gm4575-201ENSMUST00000182991 1002 ntBASIC22.35■■□□□ 1.17
Scn4aQ9ER60 Gm8709-201ENSMUST00000183230 1012 ntBASIC22.35■■□□□ 1.17
Scn4aQ9ER60 Gm10293-201ENSMUST00000076317 1002 ntBASIC22.35■■□□□ 1.17
Scn4aQ9ER60 Gm6316-201ENSMUST00000082064 1020 ntBASIC22.35■■□□□ 1.17
Scn4aQ9ER60 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
Scn4aQ9ER60 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Scn4aQ9ER60 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Scn4aQ9ER60 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC22.34■■□□□ 1.17
Scn4aQ9ER60 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Scn4aQ9ER60 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC22.34■■□□□ 1.17
Scn4aQ9ER60 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC22.34■■□□□ 1.17
Scn4aQ9ER60 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Scn4aQ9ER60 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Scn4aQ9ER60 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Scn4aQ9ER60 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Scn4aQ9ER60 Gm17837-201ENSMUST00000186435 985 ntBASIC22.34■■□□□ 1.17
Scn4aQ9ER60 Gm44719-201ENSMUST00000206404 149 ntBASIC22.34■■□□□ 1.17
Scn4aQ9ER60 Msgn1-201ENSMUST00000049877 613 ntAPPRIS P1 BASIC22.34■■□□□ 1.17
Scn4aQ9ER60 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.17
Scn4aQ9ER60 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC22.33■■□□□ 1.17
Scn4aQ9ER60 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
Scn4aQ9ER60 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC22.33■■□□□ 1.16
Scn4aQ9ER60 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC22.33■■□□□ 1.16
Scn4aQ9ER60 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
Scn4aQ9ER60 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC22.33■■□□□ 1.16
Scn4aQ9ER60 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
Scn4aQ9ER60 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.16
Scn4aQ9ER60 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
Scn4aQ9ER60 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
Scn4aQ9ER60 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Retrieved 100 of 76,532 protein–RNA pairs in 37.4 ms