Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
Sh3rf1Q69ZI1 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sh3rf1Q69ZI1 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sh3rf1Q69ZI1 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Sh3rf1Q69ZI1 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC16.62■□□□□ 0.25
Sh3rf1Q69ZI1 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Sh3rf1Q69ZI1 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Sh3rf1Q69ZI1 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Sh3rf1Q69ZI1 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Sh3rf1Q69ZI1 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Sh3rf1Q69ZI1 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Sh3rf1Q69ZI1 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Sh3rf1Q69ZI1 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Sh3rf1Q69ZI1 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Sh3rf1Q69ZI1 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Sh3rf1Q69ZI1 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Sh3rf1Q69ZI1 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Sh3rf1Q69ZI1 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Sh3rf1Q69ZI1 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Sh3rf1Q69ZI1 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Sh3rf1Q69ZI1 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Sh3rf1Q69ZI1 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Sh3rf1Q69ZI1 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Sh3rf1Q69ZI1 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Sh3rf1Q69ZI1 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Sh3rf1Q69ZI1 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Sh3rf1Q69ZI1 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC16.6■□□□□ 0.25
Sh3rf1Q69ZI1 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
Sh3rf1Q69ZI1 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Sh3rf1Q69ZI1 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Sh3rf1Q69ZI1 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Sh3rf1Q69ZI1 Gm4217-201ENSMUST00000182243 1002 ntBASIC16.6■□□□□ 0.25
Sh3rf1Q69ZI1 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC16.6■□□□□ 0.25
Sh3rf1Q69ZI1 Gm18101-201ENSMUST00000215769 548 ntBASIC16.6■□□□□ 0.25
Sh3rf1Q69ZI1 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Sh3rf1Q69ZI1 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Sh3rf1Q69ZI1 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC16.6■□□□□ 0.25
Sh3rf1Q69ZI1 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Sh3rf1Q69ZI1 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Sh3rf1Q69ZI1 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Sh3rf1Q69ZI1 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC16.6■□□□□ 0.25
Sh3rf1Q69ZI1 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Sh3rf1Q69ZI1 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Sh3rf1Q69ZI1 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Sh3rf1Q69ZI1 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Sh3rf1Q69ZI1 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Sh3rf1Q69ZI1 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Sh3rf1Q69ZI1 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Sh3rf1Q69ZI1 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Sh3rf1Q69ZI1 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Sh3rf1Q69ZI1 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
Sh3rf1Q69ZI1 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
Sh3rf1Q69ZI1 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Sh3rf1Q69ZI1 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Sh3rf1Q69ZI1 Gm22697-201ENSMUST00000175194 63 ntBASIC16.59■□□□□ 0.25
Sh3rf1Q69ZI1 Gm6345-202ENSMUST00000180900 204 ntBASIC16.59■□□□□ 0.25
Sh3rf1Q69ZI1 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC16.59■□□□□ 0.25
Sh3rf1Q69ZI1 Gm19430-201ENSMUST00000193847 2137 ntBASIC16.59■□□□□ 0.25
Sh3rf1Q69ZI1 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Sh3rf1Q69ZI1 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
Sh3rf1Q69ZI1 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC16.59■□□□□ 0.25
Sh3rf1Q69ZI1 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
Sh3rf1Q69ZI1 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Sh3rf1Q69ZI1 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
Sh3rf1Q69ZI1 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
Sh3rf1Q69ZI1 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Sh3rf1Q69ZI1 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
Sh3rf1Q69ZI1 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
Sh3rf1Q69ZI1 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Sh3rf1Q69ZI1 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
Sh3rf1Q69ZI1 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Sh3rf1Q69ZI1 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Sh3rf1Q69ZI1 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Sh3rf1Q69ZI1 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Sh3rf1Q69ZI1 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC16.58■□□□□ 0.25
Sh3rf1Q69ZI1 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
Sh3rf1Q69ZI1 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Sh3rf1Q69ZI1 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
Sh3rf1Q69ZI1 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
Sh3rf1Q69ZI1 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.25
Sh3rf1Q69ZI1 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Sh3rf1Q69ZI1 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Sh3rf1Q69ZI1 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Sh3rf1Q69ZI1 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
Sh3rf1Q69ZI1 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Sh3rf1Q69ZI1 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Sh3rf1Q69ZI1 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Sh3rf1Q69ZI1 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC16.58■□□□□ 0.24
Sh3rf1Q69ZI1 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Sh3rf1Q69ZI1 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Sh3rf1Q69ZI1 AC134329.2-201ENSMUST00000217897 428 ntBASIC16.58■□□□□ 0.24
Sh3rf1Q69ZI1 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Sh3rf1Q69ZI1 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Sh3rf1Q69ZI1 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Sh3rf1Q69ZI1 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Sh3rf1Q69ZI1 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
Sh3rf1Q69ZI1 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Sh3rf1Q69ZI1 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
Sh3rf1Q69ZI1 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Sh3rf1Q69ZI1 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 33.2 ms