Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Lig3P97386 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Lig3P97386 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Lig3P97386 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Lig3P97386 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC17.82■□□□□ 0.44
Lig3P97386 Gm37935-201ENSMUST00000192012 982 ntBASIC17.82■□□□□ 0.44
Lig3P97386 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC17.82■□□□□ 0.44
Lig3P97386 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Lig3P97386 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Lig3P97386 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Lig3P97386 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Lig3P97386 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Lig3P97386 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Lig3P97386 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Lig3P97386 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Lig3P97386 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Lig3P97386 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Lig3P97386 Gbp5-201ENSMUST00000090127 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Lig3P97386 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC17.82■□□□□ 0.44
Lig3P97386 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Lig3P97386 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Lig3P97386 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Lig3P97386 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Lig3P97386 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Lig3P97386 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Lig3P97386 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Lig3P97386 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Lig3P97386 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
Lig3P97386 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Lig3P97386 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Lig3P97386 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
Lig3P97386 Olfr129-201ENSMUST00000122318 993 ntBASIC17.81■□□□□ 0.44
Lig3P97386 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC17.81■□□□□ 0.44
Lig3P97386 Gm18733-201ENSMUST00000173950 856 ntBASIC17.81■□□□□ 0.44
Lig3P97386 Gm3272-201ENSMUST00000181181 1229 ntBASIC17.81■□□□□ 0.44
Lig3P97386 Ndufaf8-202ENSMUST00000185558 427 ntTSL 5 BASIC17.81■□□□□ 0.44
Lig3P97386 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Lig3P97386 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Lig3P97386 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Lig3P97386 Gm10566-201ENSMUST00000086739 996 ntBASIC17.81■□□□□ 0.44
Lig3P97386 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Lig3P97386 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC17.81■□□□□ 0.44
Lig3P97386 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC17.81■□□□□ 0.44
Lig3P97386 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Lig3P97386 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Lig3P97386 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Lig3P97386 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC17.81■□□□□ 0.44
Lig3P97386 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Lig3P97386 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Lig3P97386 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Lig3P97386 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Lig3P97386 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Lig3P97386 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Lig3P97386 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC17.8■□□□□ 0.44
Lig3P97386 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Lig3P97386 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Lig3P97386 Gm13401-201ENSMUST00000117074 291 ntBASIC17.8■□□□□ 0.44
Lig3P97386 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Lig3P97386 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Lig3P97386 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Lig3P97386 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC17.8■□□□□ 0.44
Lig3P97386 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC17.8■□□□□ 0.44
Lig3P97386 Ighv6-1-201ENSMUST00000193612 343 ntBASIC17.8■□□□□ 0.44
Lig3P97386 Gm37722-201ENSMUST00000193757 208 ntBASIC17.8■□□□□ 0.44
Lig3P97386 Gm37025-201ENSMUST00000195159 829 ntBASIC17.8■□□□□ 0.44
Lig3P97386 AC120002.2-201ENSMUST00000220205 773 ntBASIC17.8■□□□□ 0.44
Lig3P97386 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Lig3P97386 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Lig3P97386 Bcr-201ENSMUST00000164107 6839 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Lig3P97386 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC17.8■□□□□ 0.44
Lig3P97386 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Lig3P97386 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Lig3P97386 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Lig3P97386 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Lig3P97386 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Lig3P97386 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Lig3P97386 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Lig3P97386 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Lig3P97386 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Lig3P97386 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Lig3P97386 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Lig3P97386 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Lig3P97386 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Lig3P97386 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Lig3P97386 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Lig3P97386 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Lig3P97386 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Lig3P97386 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Lig3P97386 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC17.79■□□□□ 0.44
Lig3P97386 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
Lig3P97386 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Lig3P97386 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Lig3P97386 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Lig3P97386 Adamts17-202ENSMUST00000107478 6416 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Lig3P97386 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Lig3P97386 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Lig3P97386 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Lig3P97386 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Lig3P97386 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC17.79■□□□□ 0.44
Lig3P97386 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 26.7 ms