Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 MIR1269B-201ENST00000580405 75 ntBASIC5.65□□□□□ -1.5
CCDC39Q9UFE4 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC5.65□□□□□ -1.5
CCDC39Q9UFE4 uc_338.9-201ENST00000617424 182 ntBASIC5.65□□□□□ -1.5
CCDC39Q9UFE4 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC5.65□□□□□ -1.5
CCDC39Q9UFE4 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
CCDC39Q9UFE4 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
CCDC39Q9UFE4 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
CCDC39Q9UFE4 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
CCDC39Q9UFE4 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 AC012618.3-205ENST00000637896 1496 ntBASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 THAP12P4-201ENST00000528321 2266 ntBASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 Y_RNA.47-201ENST00000362697 108 ntBASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 RNU6-1120P-201ENST00000362988 108 ntBASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 SNORA73.1-201ENST00000363107 205 ntBASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 RNU6-777P-201ENST00000364265 104 ntBASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 RNU6-98P-201ENST00000384173 107 ntBASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 RNU6-769P-201ENST00000384407 104 ntBASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 RNU6-1026P-201ENST00000384465 108 ntBASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 SNORA70.10-201ENST00000384515 134 ntBASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 TMSB4XP8-201ENST00000402089 135 ntBASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 MIR548I3-201ENST00000408378 149 ntBASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 MIR548I1-201ENST00000408810 149 ntBASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 TMSB4XP6-201ENST00000415187 135 ntBASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 TMSB4XP1-201ENST00000424567 135 ntBASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 RPS27P18-201ENST00000431701 247 ntBASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 LINC01891-201ENST00000439798 538 ntTSL 4 BASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 MTCO1P27-201ENST00000448269 226 ntBASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 AL691482.1-201ENST00000453255 87 ntBASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 RPL7AP28-201ENST00000464513 571 ntBASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 RN7SL222P-201ENST00000476452 299 ntBASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 AC013356.1-201ENST00000489027 564 ntBASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 RPL38P4-201ENST00000502376 214 ntBASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 ATP6V1G1P6-201ENST00000504007 334 ntBASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 CDV3-208ENST00000511392 554 ntTSL 5 BASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 RNU6-150P-201ENST00000516237 95 ntBASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 AC012339.2-201ENST00000523996 453 ntBASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 AC022882.1-201ENST00000532142 501 ntBASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 MYL12BP1-201ENST00000569826 507 ntBASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 AC105254.2-201ENST00000603636 436 ntBASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 RNU6-87P-201ENST00000607561 108 ntBASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 AC022418.1-201ENST00000624118 445 ntBASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 RNF123-214ENST00000629802 207 ntTSL 5 BASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 AC093311.1-201ENST00000506586 2021 ntBASIC5.64□□□□□ -1.51
CCDC39Q9UFE4 ZNF519P1-201ENST00000449011 1626 ntBASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 RNU1-83P-201ENST00000363426 164 ntBASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 SNORD116-23-201ENST00000384645 92 ntBASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 MIR195-201ENST00000385194 87 ntBASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 RNA5SP372-201ENST00000390836 115 ntBASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 AL136116.1-201ENST00000403591 381 ntBASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 RNU6-985P-201ENST00000410182 104 ntBASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 ERI3-IT1-201ENST00000414156 619 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 AC048351.1-201ENST00000420064 602 ntBASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 AL451054.2-201ENST00000420896 202 ntBASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 AL355433.1-201ENST00000422804 300 ntBASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 AC005517.2-201ENST00000424673 553 ntBASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 IGHV5-78-201ENST00000450948 295 ntBASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 AC002553.2-201ENST00000453217 340 ntBASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 AL354710.1-201ENST00000453641 246 ntBASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 RN7SL817P-201ENST00000480777 288 ntBASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 AC068587.1-201ENST00000483613 781 ntBASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 EIF4EP3-201ENST00000498782 656 ntBASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 AC111193.1-201ENST00000504097 155 ntBASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 COX6B1P5-201ENST00000509843 249 ntBASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 AC107222.1-201ENST00000510899 637 ntBASIC5.63□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 113.3 ms