Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC4.28□□□□□ -1.72
VSX1Q9NZR4 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
VSX1Q9NZR4 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.28□□□□□ -1.72
VSX1Q9NZR4 Y_RNA.70-201ENST00000362886 110 ntBASIC4.28□□□□□ -1.72
VSX1Q9NZR4 RNA5SP28-201ENST00000363841 119 ntBASIC4.28□□□□□ -1.72
VSX1Q9NZR4 RNU4-1-201ENST00000363925 141 ntBASIC4.28□□□□□ -1.72
VSX1Q9NZR4 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC4.28□□□□□ -1.72
VSX1Q9NZR4 RNU6-456P-201ENST00000384493 107 ntBASIC4.28□□□□□ -1.72
VSX1Q9NZR4 MT-TD-201ENST00000387419 68 ntBASIC4.28□□□□□ -1.72
VSX1Q9NZR4 ARL4AP5-201ENST00000404372 599 ntBASIC4.28□□□□□ -1.72
VSX1Q9NZR4 RNU6ATAC7P-201ENST00000408111 127 ntBASIC4.28□□□□□ -1.72
VSX1Q9NZR4 RPL36AP36-201ENST00000418616 301 ntBASIC4.28□□□□□ -1.72
VSX1Q9NZR4 ELOCP4-201ENST00000420090 333 ntBASIC4.28□□□□□ -1.72
VSX1Q9NZR4 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC4.28□□□□□ -1.72
VSX1Q9NZR4 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC4.28□□□□□ -1.72
VSX1Q9NZR4 RWDD4P2-201ENST00000426392 563 ntBASIC4.28□□□□□ -1.72
VSX1Q9NZR4 AC006548.1-201ENST00000427470 102 ntBASIC4.28□□□□□ -1.72
VSX1Q9NZR4 RPS27P18-201ENST00000431701 247 ntBASIC4.28□□□□□ -1.72
VSX1Q9NZR4 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC4.28□□□□□ -1.72
VSX1Q9NZR4 RPS26P2-201ENST00000440331 348 ntBASIC4.28□□□□□ -1.72
VSX1Q9NZR4 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC4.28□□□□□ -1.72
VSX1Q9NZR4 AC104651.2-201ENST00000447549 528 ntBASIC4.28□□□□□ -1.72
VSX1Q9NZR4 SLC25A18P1-201ENST00000449385 454 ntBASIC4.28□□□□□ -1.72
VSX1Q9NZR4 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC4.28□□□□□ -1.72
VSX1Q9NZR4 HMGB3P21-201ENST00000452483 547 ntBASIC4.28□□□□□ -1.72
VSX1Q9NZR4 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC4.28□□□□□ -1.72
VSX1Q9NZR4 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC4.28□□□□□ -1.72
VSX1Q9NZR4 AC108059.3-201ENST00000456388 214 ntBASIC4.28□□□□□ -1.72
VSX1Q9NZR4 RPS20P24-201ENST00000457473 361 ntBASIC4.28□□□□□ -1.72
VSX1Q9NZR4 RPS4XP10-201ENST00000465034 731 ntBASIC4.28□□□□□ -1.72
VSX1Q9NZR4 RPS4XP18-201ENST00000495480 763 ntBASIC4.28□□□□□ -1.72
VSX1Q9NZR4 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC4.28□□□□□ -1.72
VSX1Q9NZR4 AC006499.3-201ENST00000506077 748 ntBASIC4.28□□□□□ -1.72
VSX1Q9NZR4 AC098799.2-201ENST00000509466 868 ntBASIC4.28□□□□□ -1.72
VSX1Q9NZR4 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC4.28□□□□□ -1.72
VSX1Q9NZR4 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC4.28□□□□□ -1.72
VSX1Q9NZR4 AC126768.1-201ENST00000511698 490 ntTSL 3 BASIC4.28□□□□□ -1.72
VSX1Q9NZR4 Y_RNA.704-201ENST00000516851 102 ntBASIC4.28□□□□□ -1.72
VSX1Q9NZR4 RN7SKP147-201ENST00000517154 244 ntBASIC4.28□□□□□ -1.72
VSX1Q9NZR4 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC4.28□□□□□ -1.72
VSX1Q9NZR4 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC4.28□□□□□ -1.72
VSX1Q9NZR4 AC107934.1-201ENST00000522215 217 ntBASIC4.28□□□□□ -1.72
VSX1Q9NZR4 DEFB109D-201ENST00000529497 240 ntBASIC4.28□□□□□ -1.72
VSX1Q9NZR4 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC4.28□□□□□ -1.72
VSX1Q9NZR4 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.28□□□□□ -1.72
VSX1Q9NZR4 HAUS8P1-201ENST00000549005 542 ntBASIC4.28□□□□□ -1.72
VSX1Q9NZR4 ARL1-211ENST00000551828 776 ntTSL 5 BASIC4.28□□□□□ -1.72
VSX1Q9NZR4 FKBP1BP1-201ENST00000553366 325 ntBASIC4.28□□□□□ -1.72
VSX1Q9NZR4 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC4.28□□□□□ -1.72
VSX1Q9NZR4 AC060771.1-201ENST00000582031 164 ntBASIC4.28□□□□□ -1.72
VSX1Q9NZR4 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC4.28□□□□□ -1.72
VSX1Q9NZR4 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC4.28□□□□□ -1.72
VSX1Q9NZR4 BNIP3P9-201ENST00000603714 553 ntBASIC4.28□□□□□ -1.72
VSX1Q9NZR4 AC004853.1-201ENST00000604902 698 ntBASIC4.28□□□□□ -1.72
VSX1Q9NZR4 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC4.28□□□□□ -1.72
VSX1Q9NZR4 AC007497.1-201ENST00000610421 561 ntBASIC4.28□□□□□ -1.72
VSX1Q9NZR4 EIF3FP1-201ENST00000613970 806 ntBASIC4.28□□□□□ -1.72
VSX1Q9NZR4 uc_338.12-201ENST00000616344 181 ntBASIC4.28□□□□□ -1.72
VSX1Q9NZR4 CR381572.1-201ENST00000625098 102 ntBASIC4.28□□□□□ -1.72
VSX1Q9NZR4 AC006065.6-201ENST00000625201 545 ntBASIC4.28□□□□□ -1.72
VSX1Q9NZR4 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
VSX1Q9NZR4 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.28□□□□□ -1.72
VSX1Q9NZR4 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
VSX1Q9NZR4 PNPT1P2-201ENST00000456768 2050 ntBASIC4.28□□□□□ -1.72
VSX1Q9NZR4 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
VSX1Q9NZR4 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.28□□□□□ -1.73
VSX1Q9NZR4 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.73
VSX1Q9NZR4 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
VSX1Q9NZR4 LINC00622-201ENST00000562811 1570 ntBASIC4.27□□□□□ -1.73
VSX1Q9NZR4 ZFRP1-201ENST00000457579 2970 ntBASIC4.27□□□□□ -1.73
VSX1Q9NZR4 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.27□□□□□ -1.73
VSX1Q9NZR4 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
VSX1Q9NZR4 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
VSX1Q9NZR4 Y_RNA.38-201ENST00000362617 102 ntBASIC4.27□□□□□ -1.73
VSX1Q9NZR4 SNORD56.2-201ENST00000363242 71 ntBASIC4.27□□□□□ -1.73
VSX1Q9NZR4 Y_RNA.159-201ENST00000363674 87 ntBASIC4.27□□□□□ -1.73
VSX1Q9NZR4 RNU6-169P-201ENST00000365336 107 ntBASIC4.27□□□□□ -1.73
VSX1Q9NZR4 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC4.27□□□□□ -1.73
VSX1Q9NZR4 MIR323B-201ENST00000385269 82 ntBASIC4.27□□□□□ -1.73
VSX1Q9NZR4 MIR765-201ENST00000390226 114 ntBASIC4.27□□□□□ -1.73
VSX1Q9NZR4 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
VSX1Q9NZR4 RNU6-373P-201ENST00000411247 98 ntBASIC4.27□□□□□ -1.73
VSX1Q9NZR4 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC4.27□□□□□ -1.73
VSX1Q9NZR4 AC114755.2-201ENST00000413520 361 ntBASIC4.27□□□□□ -1.73
VSX1Q9NZR4 AC004987.3-201ENST00000413879 771 ntBASIC4.27□□□□□ -1.73
VSX1Q9NZR4 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.27□□□□□ -1.73
VSX1Q9NZR4 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC4.27□□□□□ -1.73
VSX1Q9NZR4 AL592293.2-201ENST00000422292 996 ntBASIC4.27□□□□□ -1.73
VSX1Q9NZR4 AL645608.4-201ENST00000423619 154 ntBASIC4.27□□□□□ -1.73
VSX1Q9NZR4 AC019097.1-201ENST00000424783 735 ntBASIC4.27□□□□□ -1.73
VSX1Q9NZR4 AL513185.2-201ENST00000425543 193 ntBASIC4.27□□□□□ -1.73
VSX1Q9NZR4 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC4.27□□□□□ -1.73
VSX1Q9NZR4 RPL7P54-201ENST00000438336 674 ntBASIC4.27□□□□□ -1.73
VSX1Q9NZR4 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC4.27□□□□□ -1.73
VSX1Q9NZR4 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC4.27□□□□□ -1.73
VSX1Q9NZR4 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC4.27□□□□□ -1.73
VSX1Q9NZR4 Z95327.1-201ENST00000446082 482 ntBASIC4.27□□□□□ -1.73
VSX1Q9NZR4 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC4.27□□□□□ -1.73
VSX1Q9NZR4 IFNWP4-201ENST00000453148 294 ntBASIC4.27□□□□□ -1.73
VSX1Q9NZR4 UBDP1-202ENST00000457888 382 ntBASIC4.27□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms