Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC4.59□□□□□ -1.67
TDP1Q9NUW8 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC4.59□□□□□ -1.67
TDP1Q9NUW8 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC4.59□□□□□ -1.67
TDP1Q9NUW8 RN7SL176P-201ENST00000580352 264 ntBASIC4.59□□□□□ -1.67
TDP1Q9NUW8 UBE2L4-201ENST00000587688 464 ntBASIC4.59□□□□□ -1.67
TDP1Q9NUW8 AC245014.2-201ENST00000603689 287 ntBASIC4.59□□□□□ -1.67
TDP1Q9NUW8 AC004853.1-201ENST00000604902 698 ntBASIC4.59□□□□□ -1.67
TDP1Q9NUW8 AC246785.4-201ENST00000605374 287 ntBASIC4.59□□□□□ -1.67
TDP1Q9NUW8 RDM1-219ENST00000615378 542 ntTSL 3 BASIC4.59□□□□□ -1.67
TDP1Q9NUW8 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC4.59□□□□□ -1.67
TDP1Q9NUW8 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC4.59□□□□□ -1.67
TDP1Q9NUW8 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.59□□□□□ -1.67
TDP1Q9NUW8 AC009268.2-201ENST00000621925 457 ntBASIC4.59□□□□□ -1.67
TDP1Q9NUW8 AL158801.5-201ENST00000623123 465 ntBASIC4.59□□□□□ -1.67
TDP1Q9NUW8 AC083843.3-201ENST00000623679 2186 ntBASIC4.59□□□□□ -1.67
TDP1Q9NUW8 AC140479.6-201ENST00000633535 357 ntBASIC4.59□□□□□ -1.67
TDP1Q9NUW8 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC4.59□□□□□ -1.67
TDP1Q9NUW8 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
TDP1Q9NUW8 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.59□□□□□ -1.68
TDP1Q9NUW8 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
TDP1Q9NUW8 OR51H2P-202ENST00000641424 3046 ntBASIC4.58□□□□□ -1.68
TDP1Q9NUW8 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
TDP1Q9NUW8 Y_RNA.126-201ENST00000363382 111 ntBASIC4.58□□□□□ -1.68
TDP1Q9NUW8 RNA5SP28-201ENST00000363841 119 ntBASIC4.58□□□□□ -1.68
TDP1Q9NUW8 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
TDP1Q9NUW8 MTCO3P40-201ENST00000392516 676 ntBASIC4.58□□□□□ -1.68
TDP1Q9NUW8 AL592291.1-201ENST00000403830 352 ntBASIC4.58□□□□□ -1.68
TDP1Q9NUW8 Y_RNA.604-201ENST00000410574 102 ntBASIC4.58□□□□□ -1.68
TDP1Q9NUW8 AC022028.1-201ENST00000412054 408 ntBASIC4.58□□□□□ -1.68
TDP1Q9NUW8 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC4.58□□□□□ -1.68
TDP1Q9NUW8 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC4.58□□□□□ -1.68
TDP1Q9NUW8 RPL31P35-201ENST00000431058 377 ntBASIC4.58□□□□□ -1.68
TDP1Q9NUW8 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC4.58□□□□□ -1.68
TDP1Q9NUW8 MTND4LP10-201ENST00000435146 291 ntBASIC4.58□□□□□ -1.68
TDP1Q9NUW8 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC4.58□□□□□ -1.68
TDP1Q9NUW8 AL049734.2-201ENST00000441066 616 ntBASIC4.58□□□□□ -1.68
TDP1Q9NUW8 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC4.58□□□□□ -1.68
TDP1Q9NUW8 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
TDP1Q9NUW8 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
TDP1Q9NUW8 AL359385.1-201ENST00000456509 365 ntBASIC4.58□□□□□ -1.68
TDP1Q9NUW8 RPS20P24-201ENST00000457473 361 ntBASIC4.58□□□□□ -1.68
TDP1Q9NUW8 AC013267.1-201ENST00000458227 267 ntBASIC4.58□□□□□ -1.68
TDP1Q9NUW8 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
TDP1Q9NUW8 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC4.58□□□□□ -1.68
TDP1Q9NUW8 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC4.58□□□□□ -1.68
TDP1Q9NUW8 AC114967.1-201ENST00000504890 259 ntBASIC4.58□□□□□ -1.68
TDP1Q9NUW8 HMGB1P29-201ENST00000505659 499 ntBASIC4.58□□□□□ -1.68
TDP1Q9NUW8 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC4.58□□□□□ -1.68
TDP1Q9NUW8 AC108475.1-201ENST00000507880 950 ntBASIC4.58□□□□□ -1.68
TDP1Q9NUW8 PTGES3P3-201ENST00000511479 482 ntBASIC4.58□□□□□ -1.68
TDP1Q9NUW8 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC4.58□□□□□ -1.68
TDP1Q9NUW8 MIR2116-201ENST00000517221 80 ntBASIC4.58□□□□□ -1.68
TDP1Q9NUW8 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC4.58□□□□□ -1.68
TDP1Q9NUW8 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC4.58□□□□□ -1.68
TDP1Q9NUW8 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC4.58□□□□□ -1.68
TDP1Q9NUW8 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC4.58□□□□□ -1.68
TDP1Q9NUW8 AC068446.3-201ENST00000555285 382 ntBASIC4.58□□□□□ -1.68
TDP1Q9NUW8 AL161713.1-201ENST00000555538 145 ntBASIC4.58□□□□□ -1.68
TDP1Q9NUW8 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
TDP1Q9NUW8 AC067959.1-201ENST00000604334 379 ntBASIC4.58□□□□□ -1.68
TDP1Q9NUW8 AP002360.4-201ENST00000606980 481 ntBASIC4.58□□□□□ -1.68
TDP1Q9NUW8 AL391813.2-201ENST00000609113 322 ntBASIC4.58□□□□□ -1.68
TDP1Q9NUW8 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC4.58□□□□□ -1.68
TDP1Q9NUW8 AL355472.4-201ENST00000610233 626 ntBASIC4.58□□□□□ -1.68
TDP1Q9NUW8 BX664608.1-201ENST00000610519 487 ntBASIC4.58□□□□□ -1.68
TDP1Q9NUW8 ZYXP1-201ENST00000617638 118 ntBASIC4.58□□□□□ -1.68
TDP1Q9NUW8 AC079597.1-201ENST00000624306 508 ntBASIC4.58□□□□□ -1.68
TDP1Q9NUW8 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC4.58□□□□□ -1.68
TDP1Q9NUW8 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC4.58□□□□□ -1.68
TDP1Q9NUW8 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC4.58□□□□□ -1.68
TDP1Q9NUW8 AL672167.1-205ENST00000641112 3080 ntBASIC4.58□□□□□ -1.68
TDP1Q9NUW8 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.58□□□□□ -1.68
TDP1Q9NUW8 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
TDP1Q9NUW8 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC4.58□□□□□ -1.68
TDP1Q9NUW8 MAPK10-286ENST00000641208 8747 ntBASIC4.58□□□□□ -1.68
TDP1Q9NUW8 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.58□□□□□ -1.68
TDP1Q9NUW8 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.58□□□□□ -1.68
TDP1Q9NUW8 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC4.58□□□□□ -1.68
TDP1Q9NUW8 AL158163.1-201ENST00000603915 1649 ntBASIC4.57□□□□□ -1.68
TDP1Q9NUW8 PABPC1P7-201ENST00000413177 1513 ntBASIC4.57□□□□□ -1.68
TDP1Q9NUW8 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC4.57□□□□□ -1.68
TDP1Q9NUW8 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
TDP1Q9NUW8 NXPH1-205ENST00000602349 1953 ntBASIC4.57□□□□□ -1.68
TDP1Q9NUW8 MIR383-201ENST00000362257 73 ntBASIC4.57□□□□□ -1.68
TDP1Q9NUW8 RNU1-83P-201ENST00000363426 164 ntBASIC4.57□□□□□ -1.68
TDP1Q9NUW8 RNU4-12P-201ENST00000365233 139 ntBASIC4.57□□□□□ -1.68
TDP1Q9NUW8 RNU6-359P-201ENST00000365466 108 ntBASIC4.57□□□□□ -1.68
TDP1Q9NUW8 Y_RNA.548-201ENST00000384656 105 ntBASIC4.57□□□□□ -1.68
TDP1Q9NUW8 SNORD115-47-201ENST00000391226 86 ntBASIC4.57□□□□□ -1.68
TDP1Q9NUW8 MRPL42P2-201ENST00000403169 426 ntBASIC4.57□□□□□ -1.68
TDP1Q9NUW8 RNU4-55P-201ENST00000410731 137 ntBASIC4.57□□□□□ -1.68
TDP1Q9NUW8 AC069157.1-201ENST00000421749 137 ntBASIC4.57□□□□□ -1.68
TDP1Q9NUW8 RPL23AP38-201ENST00000423801 469 ntBASIC4.57□□□□□ -1.68
TDP1Q9NUW8 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC4.57□□□□□ -1.68
TDP1Q9NUW8 AC104850.1-201ENST00000435940 476 ntBASIC4.57□□□□□ -1.68
TDP1Q9NUW8 AC108734.1-201ENST00000439549 399 ntBASIC4.57□□□□□ -1.68
TDP1Q9NUW8 MTATP6P23-201ENST00000440153 476 ntBASIC4.57□□□□□ -1.68
TDP1Q9NUW8 AC114495.1-201ENST00000441274 436 ntBASIC4.57□□□□□ -1.68
TDP1Q9NUW8 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC4.57□□□□□ -1.68
TDP1Q9NUW8 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC4.57□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 121.2 ms