Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 VN1R83P-201ENST00000595685 445 ntBASIC4.88□□□□□ -1.63
CHMP4AQ9BY43 AL034351.1-201ENST00000605288 668 ntBASIC4.88□□□□□ -1.63
CHMP4AQ9BY43 AL356863.1-201ENST00000623378 1080 ntBASIC4.88□□□□□ -1.63
CHMP4AQ9BY43 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC4.88□□□□□ -1.63
CHMP4AQ9BY43 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC4.88□□□□□ -1.63
CHMP4AQ9BY43 AC109315.1-201ENST00000584143 1347 ntBASIC4.88□□□□□ -1.63
CHMP4AQ9BY43 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
CHMP4AQ9BY43 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC4.88□□□□□ -1.63
CHMP4AQ9BY43 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC4.88□□□□□ -1.63
CHMP4AQ9BY43 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
CHMP4AQ9BY43 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
CHMP4AQ9BY43 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
CHMP4AQ9BY43 SDAD1P2-201ENST00000441308 2028 ntBASIC4.87□□□□□ -1.63
CHMP4AQ9BY43 AC092326.2-201ENST00000624772 1561 ntBASIC4.87□□□□□ -1.63
CHMP4AQ9BY43 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
CHMP4AQ9BY43 MIR423-201ENST00000362201 94 ntBASIC4.87□□□□□ -1.63
CHMP4AQ9BY43 RNA5SP424-201ENST00000390988 115 ntBASIC4.87□□□□□ -1.63
CHMP4AQ9BY43 PTMAP2-201ENST00000397627 327 ntBASIC4.87□□□□□ -1.63
CHMP4AQ9BY43 AL161449.1-201ENST00000414531 1199 ntBASIC4.87□□□□□ -1.63
CHMP4AQ9BY43 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
CHMP4AQ9BY43 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC4.87□□□□□ -1.63
CHMP4AQ9BY43 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC4.87□□□□□ -1.63
CHMP4AQ9BY43 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC4.87□□□□□ -1.63
CHMP4AQ9BY43 Z74696.2-201ENST00000436514 498 ntBASIC4.87□□□□□ -1.63
CHMP4AQ9BY43 RAC1P7-201ENST00000445367 377 ntBASIC4.87□□□□□ -1.63
CHMP4AQ9BY43 AC007327.1-201ENST00000447461 264 ntBASIC4.87□□□□□ -1.63
CHMP4AQ9BY43 AL133547.1-201ENST00000448546 220 ntBASIC4.87□□□□□ -1.63
CHMP4AQ9BY43 AL500522.2-201ENST00000448562 343 ntBASIC4.87□□□□□ -1.63
CHMP4AQ9BY43 AL353691.1-201ENST00000451332 387 ntBASIC4.87□□□□□ -1.63
CHMP4AQ9BY43 TRGVB-201ENST00000453257 471 ntBASIC4.87□□□□□ -1.63
CHMP4AQ9BY43 AC234775.1-201ENST00000454247 670 ntBASIC4.87□□□□□ -1.63
CHMP4AQ9BY43 DNAJC19P1-201ENST00000455312 319 ntBASIC4.87□□□□□ -1.63
CHMP4AQ9BY43 AC092798.1-201ENST00000458542 409 ntBASIC4.87□□□□□ -1.63
CHMP4AQ9BY43 ANK3-207ENST00000460468 677 ntTSL 3 BASIC4.87□□□□□ -1.63
CHMP4AQ9BY43 AC084198.1-201ENST00000477747 402 ntBASIC4.87□□□□□ -1.63
CHMP4AQ9BY43 FAM172BP-201ENST00000487497 1089 ntBASIC4.87□□□□□ -1.63
CHMP4AQ9BY43 AC023424.2-201ENST00000493479 777 ntBASIC4.87□□□□□ -1.63
CHMP4AQ9BY43 AP002812.1-201ENST00000495378 474 ntBASIC4.87□□□□□ -1.63
CHMP4AQ9BY43 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC4.87□□□□□ -1.63
CHMP4AQ9BY43 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC4.87□□□□□ -1.63
CHMP4AQ9BY43 SNORA70.16-201ENST00000516390 95 ntBASIC4.87□□□□□ -1.63
CHMP4AQ9BY43 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
CHMP4AQ9BY43 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC4.87□□□□□ -1.63
CHMP4AQ9BY43 AL121766.1-201ENST00000547436 487 ntBASIC4.87□□□□□ -1.63
CHMP4AQ9BY43 AC090877.1-201ENST00000561418 344 ntBASIC4.87□□□□□ -1.63
CHMP4AQ9BY43 AC034105.4-201ENST00000568304 277 ntBASIC4.87□□□□□ -1.63
CHMP4AQ9BY43 AC141257.3-201ENST00000572906 215 ntBASIC4.87□□□□□ -1.63
CHMP4AQ9BY43 RN7SL339P-201ENST00000580597 296 ntBASIC4.87□□□□□ -1.63
CHMP4AQ9BY43 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC4.87□□□□□ -1.63
CHMP4AQ9BY43 AL365400.2-201ENST00000605604 902 ntBASIC4.87□□□□□ -1.63
CHMP4AQ9BY43 AL451074.6-201ENST00000608512 729 ntBASIC4.87□□□□□ -1.63
CHMP4AQ9BY43 AC084824.4-201ENST00000620106 731 ntBASIC4.87□□□□□ -1.63
CHMP4AQ9BY43 SLC10A5P1-201ENST00000379063 1306 ntBASIC4.87□□□□□ -1.63
CHMP4AQ9BY43 AC005832.2-201ENST00000538921 1430 ntBASIC4.87□□□□□ -1.63
CHMP4AQ9BY43 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC4.87□□□□□ -1.63
CHMP4AQ9BY43 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.86□□□□□ -1.63
CHMP4AQ9BY43 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC4.86□□□□□ -1.63
CHMP4AQ9BY43 FAM35BP-202ENST00000497389 3337 ntBASIC4.86□□□□□ -1.63
CHMP4AQ9BY43 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CHMP4AQ9BY43 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
CHMP4AQ9BY43 RNU6-28P-201ENST00000362378 107 ntBASIC4.86□□□□□ -1.63
CHMP4AQ9BY43 RNU6-560P-201ENST00000364007 108 ntBASIC4.86□□□□□ -1.63
CHMP4AQ9BY43 SNORA14A-201ENST00000364773 135 ntBASIC4.86□□□□□ -1.63
CHMP4AQ9BY43 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
CHMP4AQ9BY43 RNA5SP38-201ENST00000410750 119 ntBASIC4.86□□□□□ -1.63
CHMP4AQ9BY43 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC4.86□□□□□ -1.63
CHMP4AQ9BY43 AC127526.1-201ENST00000417526 366 ntBASIC4.86□□□□□ -1.63
CHMP4AQ9BY43 TIMM9P2-201ENST00000419324 266 ntBASIC4.86□□□□□ -1.63
CHMP4AQ9BY43 AC018644.1-201ENST00000429934 551 ntBASIC4.86□□□□□ -1.63
CHMP4AQ9BY43 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC4.86□□□□□ -1.63
CHMP4AQ9BY43 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC4.86□□□□□ -1.63
CHMP4AQ9BY43 MTND1P9-201ENST00000453775 944 ntBASIC4.86□□□□□ -1.63
CHMP4AQ9BY43 TMEM251P1-201ENST00000503717 318 ntBASIC4.86□□□□□ -1.63
CHMP4AQ9BY43 AC139783.2-201ENST00000504847 1145 ntBASIC4.86□□□□□ -1.63
CHMP4AQ9BY43 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC4.86□□□□□ -1.63
CHMP4AQ9BY43 SCARNA14-201ENST00000516903 136 ntBASIC4.86□□□□□ -1.63
CHMP4AQ9BY43 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC4.86□□□□□ -1.63
CHMP4AQ9BY43 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC4.86□□□□□ -1.63
CHMP4AQ9BY43 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC4.86□□□□□ -1.63
CHMP4AQ9BY43 AL845331.3-202ENST00000562856 261 ntBASIC4.86□□□□□ -1.63
CHMP4AQ9BY43 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC4.86□□□□□ -1.63
CHMP4AQ9BY43 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC4.86□□□□□ -1.63
CHMP4AQ9BY43 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC4.86□□□□□ -1.63
CHMP4AQ9BY43 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC4.86□□□□□ -1.63
CHMP4AQ9BY43 BNIP3P27-201ENST00000599991 412 ntBASIC4.86□□□□□ -1.63
CHMP4AQ9BY43 AC011451.2-201ENST00000604303 598 ntBASIC4.86□□□□□ -1.63
CHMP4AQ9BY43 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CHMP4AQ9BY43 MIR4727-201ENST00000622232 55 ntBASIC4.86□□□□□ -1.63
CHMP4AQ9BY43 AC004808.1-201ENST00000627671 721 ntBASIC4.86□□□□□ -1.63
CHMP4AQ9BY43 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC4.86□□□□□ -1.63
CHMP4AQ9BY43 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC4.86□□□□□ -1.63
CHMP4AQ9BY43 TPTE2P4-201ENST00000258589 1605 ntBASIC4.86□□□□□ -1.63
CHMP4AQ9BY43 FAM35DP-201ENST00000323387 2712 ntBASIC4.86□□□□□ -1.63
CHMP4AQ9BY43 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC4.85□□□□□ -1.63
CHMP4AQ9BY43 RNU6-413P-201ENST00000384115 107 ntBASIC4.85□□□□□ -1.63
CHMP4AQ9BY43 MIR200C-201ENST00000384980 68 ntBASIC4.85□□□□□ -1.63
CHMP4AQ9BY43 MIR493-201ENST00000385254 89 ntBASIC4.85□□□□□ -1.63
CHMP4AQ9BY43 AL031679.1-201ENST00000400616 525 ntBASIC4.85□□□□□ -1.63
CHMP4AQ9BY43 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC4.85□□□□□ -1.63
CHMP4AQ9BY43 RNU2-47P-201ENST00000410649 186 ntBASIC4.85□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 98.5 ms