Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
TRAIPQ9BWF2 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
TRAIPQ9BWF2 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
TRAIPQ9BWF2 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC5.89□□□□□ -1.47
TRAIPQ9BWF2 Y_RNA.86-201ENST00000363020 111 ntBASIC5.89□□□□□ -1.47
TRAIPQ9BWF2 SNORA70.6-201ENST00000383934 134 ntBASIC5.89□□□□□ -1.47
TRAIPQ9BWF2 SNORA5.1-201ENST00000384275 131 ntBASIC5.89□□□□□ -1.47
TRAIPQ9BWF2 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC5.89□□□□□ -1.47
TRAIPQ9BWF2 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC5.89□□□□□ -1.47
TRAIPQ9BWF2 AL161722.2-201ENST00000434731 981 ntBASIC5.89□□□□□ -1.47
TRAIPQ9BWF2 MTND4P25-201ENST00000441039 533 ntBASIC5.89□□□□□ -1.47
TRAIPQ9BWF2 LINC02210-201ENST00000444561 288 ntBASIC5.89□□□□□ -1.47
TRAIPQ9BWF2 GAPDHP27-201ENST00000447427 1020 ntBASIC5.89□□□□□ -1.47
TRAIPQ9BWF2 BX842559.2-201ENST00000451418 605 ntBASIC5.89□□□□□ -1.47
TRAIPQ9BWF2 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC5.89□□□□□ -1.47
TRAIPQ9BWF2 RPS27AP17-201ENST00000463344 455 ntBASIC5.89□□□□□ -1.47
TRAIPQ9BWF2 AC092451.1-201ENST00000480211 153 ntBASIC5.89□□□□□ -1.47
TRAIPQ9BWF2 AC078918.1-201ENST00000498515 228 ntBASIC5.89□□□□□ -1.47
TRAIPQ9BWF2 AC008628.2-201ENST00000502605 298 ntBASIC5.89□□□□□ -1.47
TRAIPQ9BWF2 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
TRAIPQ9BWF2 AL359273.1-201ENST00000510918 627 ntBASIC5.89□□□□□ -1.47
TRAIPQ9BWF2 AC098976.1-201ENST00000513014 541 ntBASIC5.89□□□□□ -1.47
TRAIPQ9BWF2 AC103843.2-201ENST00000530523 682 ntBASIC5.89□□□□□ -1.47
TRAIPQ9BWF2 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
TRAIPQ9BWF2 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC5.89□□□□□ -1.47
TRAIPQ9BWF2 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC5.89□□□□□ -1.47
TRAIPQ9BWF2 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC5.89□□□□□ -1.47
TRAIPQ9BWF2 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC5.89□□□□□ -1.47
TRAIPQ9BWF2 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC5.89□□□□□ -1.47
TRAIPQ9BWF2 RPL10P14-201ENST00000565265 298 ntBASIC5.89□□□□□ -1.47
TRAIPQ9BWF2 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC5.89□□□□□ -1.47
TRAIPQ9BWF2 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC5.89□□□□□ -1.47
TRAIPQ9BWF2 MIR4703-201ENST00000577728 79 ntBASIC5.89□□□□□ -1.47
TRAIPQ9BWF2 AC011712.1-201ENST00000588959 234 ntBASIC5.89□□□□□ -1.47
TRAIPQ9BWF2 AL158032.1-201ENST00000605401 106 ntBASIC5.89□□□□□ -1.47
TRAIPQ9BWF2 RMST_3.1-201ENST00000611651 109 ntBASIC5.89□□□□□ -1.47
TRAIPQ9BWF2 AC006504.8-201ENST00000621046 635 ntBASIC5.89□□□□□ -1.47
TRAIPQ9BWF2 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC5.89□□□□□ -1.47
TRAIPQ9BWF2 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
TRAIPQ9BWF2 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
TRAIPQ9BWF2 SALL4P2-201ENST00000423288 2910 ntBASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 AC011493.1-201ENST00000596753 1632 ntBASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 RPL7P26-201ENST00000333817 754 ntBASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 RNA5SP305-201ENST00000362665 119 ntBASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 Y_RNA.72-201ENST00000362894 103 ntBASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 RNA5SP189-201ENST00000364920 115 ntBASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 RNU6-61P-201ENST00000365528 109 ntBASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 SMIM11P1-201ENST00000369586 178 ntBASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 RNU6-190P-201ENST00000384154 102 ntBASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 MIR1290-201ENST00000408735 78 ntBASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 PDSS1P1-201ENST00000422953 1114 ntBASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 AC018630.2-202ENST00000422992 927 ntBASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 RPSAP50-201ENST00000481955 852 ntBASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 AC078817.1-201ENST00000492623 435 ntBASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 NDUFA5P12-201ENST00000503796 343 ntBASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 HMGB1P22-201ENST00000505315 124 ntBASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 RN7SKP219-201ENST00000516825 296 ntBASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 NRON-201ENST00000517270 370 ntBASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 BNIP3P6-201ENST00000549284 499 ntBASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 RN7SL708P-201ENST00000580952 299 ntBASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 AC010525.2-201ENST00000590920 195 ntBASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 BNIP3P9-201ENST00000603714 553 ntBASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 AC093913.1-201ENST00000614178 329 ntBASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 AC099654.5-201ENST00000636479 350 ntBASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 AC006206.1-201ENST00000544842 3387 ntBASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 AC068870.1-201ENST00000563737 2455 ntBASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 AC108467.2-201ENST00000617640 1597 ntBASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 AP001029.2-203ENST00000589795 4910 ntBASIC5.88□□□□□ -1.47
TRAIPQ9BWF2 AC004972.1-201ENST00000623934 2209 ntBASIC5.87□□□□□ -1.47
TRAIPQ9BWF2 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
TRAIPQ9BWF2 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC5.87□□□□□ -1.47
TRAIPQ9BWF2 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
TRAIPQ9BWF2 AC092681.1-201ENST00000297369 291 ntBASIC5.87□□□□□ -1.47
TRAIPQ9BWF2 RPL23P2-201ENST00000320371 421 ntBASIC5.87□□□□□ -1.47
TRAIPQ9BWF2 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
TRAIPQ9BWF2 SNORA17.1-201ENST00000362945 126 ntBASIC5.87□□□□□ -1.47
TRAIPQ9BWF2 SNORD115-7-201ENST00000365306 82 ntBASIC5.87□□□□□ -1.47
TRAIPQ9BWF2 AL133270.1-201ENST00000402635 279 ntBASIC5.87□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms