Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC4.83□□□□□ -1.64
NUP88Q99567 MTCO1P42-201ENST00000457379 726 ntBASIC4.83□□□□□ -1.64
NUP88Q99567 AC079804.1-201ENST00000461922 436 ntBASIC4.83□□□□□ -1.64
NUP88Q99567 VN1R105P-201ENST00000486595 910 ntBASIC4.83□□□□□ -1.64
NUP88Q99567 AC108145.1-201ENST00000503770 153 ntBASIC4.83□□□□□ -1.64
NUP88Q99567 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC4.83□□□□□ -1.64
NUP88Q99567 CBX3P3-201ENST00000508108 532 ntBASIC4.83□□□□□ -1.64
NUP88Q99567 AC006499.6-201ENST00000511169 607 ntBASIC4.83□□□□□ -1.64
NUP88Q99567 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC4.83□□□□□ -1.64
NUP88Q99567 AP002748.2-201ENST00000528671 348 ntBASIC4.83□□□□□ -1.64
NUP88Q99567 MAL2-203ENST00000534619 578 ntTSL 4 BASIC4.83□□□□□ -1.64
NUP88Q99567 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC4.83□□□□□ -1.64
NUP88Q99567 SEPT7P9-203ENST00000604116 343 ntBASIC4.83□□□□□ -1.64
NUP88Q99567 AL359715.5-201ENST00000623431 443 ntBASIC4.83□□□□□ -1.64
NUP88Q99567 AC091925.2-201ENST00000625059 256 ntBASIC4.83□□□□□ -1.64
NUP88Q99567 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
NUP88Q99567 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC4.83□□□□□ -1.64
NUP88Q99567 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
NUP88Q99567 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
NUP88Q99567 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
NUP88Q99567 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
NUP88Q99567 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.82□□□□□ -1.64
NUP88Q99567 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
NUP88Q99567 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
NUP88Q99567 AL592182.3-201ENST00000642132 3304 ntBASIC4.82□□□□□ -1.64
NUP88Q99567 AC116667.1-201ENST00000604855 2072 ntBASIC4.82□□□□□ -1.64
NUP88Q99567 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
NUP88Q99567 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
NUP88Q99567 RNU6-97P-201ENST00000363387 104 ntBASIC4.82□□□□□ -1.64
NUP88Q99567 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
NUP88Q99567 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC4.82□□□□□ -1.64
NUP88Q99567 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC4.82□□□□□ -1.64
NUP88Q99567 U3.29-201ENST00000391296 212 ntBASIC4.82□□□□□ -1.64
NUP88Q99567 RNU6ATAC34P-201ENST00000408879 121 ntBASIC4.82□□□□□ -1.64
NUP88Q99567 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC4.82□□□□□ -1.64
NUP88Q99567 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC4.82□□□□□ -1.64
NUP88Q99567 MTCO3P41-201ENST00000414801 328 ntBASIC4.82□□□□□ -1.64
NUP88Q99567 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC4.82□□□□□ -1.64
NUP88Q99567 Z97055.1-201ENST00000419730 712 ntBASIC4.82□□□□□ -1.64
NUP88Q99567 AL391219.1-201ENST00000422570 483 ntBASIC4.82□□□□□ -1.64
NUP88Q99567 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
NUP88Q99567 HMGB3P9-201ENST00000441799 583 ntBASIC4.82□□□□□ -1.64
NUP88Q99567 Z95327.1-201ENST00000446082 482 ntBASIC4.82□□□□□ -1.64
NUP88Q99567 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC4.82□□□□□ -1.64
NUP88Q99567 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC4.82□□□□□ -1.64
NUP88Q99567 AL590365.1-201ENST00000450788 243 ntBASIC4.82□□□□□ -1.64
NUP88Q99567 SNRPFP4-201ENST00000456366 242 ntBASIC4.82□□□□□ -1.64
NUP88Q99567 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC4.82□□□□□ -1.64
NUP88Q99567 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC4.82□□□□□ -1.64
NUP88Q99567 COX7A2P2-201ENST00000505291 250 ntBASIC4.82□□□□□ -1.64
NUP88Q99567 AC020593.1-201ENST00000507399 299 ntBASIC4.82□□□□□ -1.64
NUP88Q99567 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC4.82□□□□□ -1.64
NUP88Q99567 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC4.82□□□□□ -1.64
NUP88Q99567 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC4.82□□□□□ -1.64
NUP88Q99567 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC4.82□□□□□ -1.64
NUP88Q99567 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC4.82□□□□□ -1.64
NUP88Q99567 IFITM8P-201ENST00000522529 394 ntBASIC4.82□□□□□ -1.64
NUP88Q99567 PHBP17-201ENST00000528576 541 ntBASIC4.82□□□□□ -1.64
NUP88Q99567 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC4.82□□□□□ -1.64
NUP88Q99567 AL353997.4-201ENST00000586196 166 ntBASIC4.82□□□□□ -1.64
NUP88Q99567 AC006130.2-201ENST00000586202 326 ntBASIC4.82□□□□□ -1.64
NUP88Q99567 AL669831.4-202ENST00000590817 238 ntBASIC4.82□□□□□ -1.64
NUP88Q99567 AC090425.2-201ENST00000608818 501 ntBASIC4.82□□□□□ -1.64
NUP88Q99567 AL031666.3-201ENST00000609320 1006 ntBASIC4.82□□□□□ -1.64
NUP88Q99567 AC104073.3-201ENST00000610942 955 ntBASIC4.82□□□□□ -1.64
NUP88Q99567 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
NUP88Q99567 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC4.82□□□□□ -1.64
NUP88Q99567 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC4.82□□□□□ -1.64
NUP88Q99567 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC4.82□□□□□ -1.64
NUP88Q99567 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.82□□□□□ -1.64
NUP88Q99567 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
NUP88Q99567 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
NUP88Q99567 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
NUP88Q99567 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
NUP88Q99567 AL049780.3-201ENST00000624612 1583 ntBASIC4.82□□□□□ -1.64
NUP88Q99567 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
NUP88Q99567 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.81□□□□□ -1.64
NUP88Q99567 AC022893.2-201ENST00000564832 3296 ntBASIC4.81□□□□□ -1.64
NUP88Q99567 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
NUP88Q99567 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC4.81□□□□□ -1.64
NUP88Q99567 RNU6-1207P-201ENST00000384343 107 ntBASIC4.81□□□□□ -1.64
NUP88Q99567 RNU6-821P-201ENST00000390995 107 ntBASIC4.81□□□□□ -1.64
NUP88Q99567 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC4.81□□□□□ -1.64
NUP88Q99567 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC4.81□□□□□ -1.64
NUP88Q99567 HSPE1P12-201ENST00000412576 301 ntBASIC4.81□□□□□ -1.64
NUP88Q99567 RPL21P32-201ENST00000419877 477 ntBASIC4.81□□□□□ -1.64
NUP88Q99567 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC4.81□□□□□ -1.64
NUP88Q99567 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC4.81□□□□□ -1.64
NUP88Q99567 AL513174.1-201ENST00000423182 629 ntBASIC4.81□□□□□ -1.64
NUP88Q99567 OR8F1P-201ENST00000425243 930 ntBASIC4.81□□□□□ -1.64
NUP88Q99567 AL356583.2-201ENST00000426536 280 ntBASIC4.81□□□□□ -1.64
NUP88Q99567 AL445669.1-201ENST00000426743 755 ntBASIC4.81□□□□□ -1.64
NUP88Q99567 AC109583.1-201ENST00000432156 268 ntBASIC4.81□□□□□ -1.64
NUP88Q99567 ELOCP18-201ENST00000434209 337 ntBASIC4.81□□□□□ -1.64
NUP88Q99567 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC4.81□□□□□ -1.64
NUP88Q99567 TBCAP1-201ENST00000436520 327 ntBASIC4.81□□□□□ -1.64
NUP88Q99567 AL445669.2-201ENST00000454425 421 ntBASIC4.81□□□□□ -1.64
NUP88Q99567 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC4.81□□□□□ -1.64
NUP88Q99567 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC4.81□□□□□ -1.64
NUP88Q99567 AC146507.1-201ENST00000468335 354 ntBASIC4.81□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms