Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC3.73□□□□□ -1.81
USP28Q96RU2 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
USP28Q96RU2 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
USP28Q96RU2 AC016716.1-201ENST00000265882 708 ntBASIC3.73□□□□□ -1.81
USP28Q96RU2 RNA5SP383-201ENST00000362934 120 ntBASIC3.73□□□□□ -1.81
USP28Q96RU2 RNU1-64P-201ENST00000365443 163 ntBASIC3.73□□□□□ -1.81
USP28Q96RU2 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.73□□□□□ -1.81
USP28Q96RU2 Y_RNA.408-201ENST00000383987 102 ntBASIC3.73□□□□□ -1.81
USP28Q96RU2 MIR16-1-201ENST00000385271 89 ntBASIC3.73□□□□□ -1.81
USP28Q96RU2 PRRC2CP1-201ENST00000404428 159 ntBASIC3.73□□□□□ -1.81
USP28Q96RU2 MTCO3P31-201ENST00000405526 789 ntBASIC3.73□□□□□ -1.81
USP28Q96RU2 AL049610.1-201ENST00000423374 372 ntBASIC3.73□□□□□ -1.81
USP28Q96RU2 HSD52-202ENST00000436225 772 ntTSL 3 BASIC3.73□□□□□ -1.81
USP28Q96RU2 COX7BP2-201ENST00000437976 242 ntBASIC3.73□□□□□ -1.81
USP28Q96RU2 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC3.73□□□□□ -1.81
USP28Q96RU2 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC3.73□□□□□ -1.81
USP28Q96RU2 AC239367.2-201ENST00000447309 705 ntBASIC3.73□□□□□ -1.81
USP28Q96RU2 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC3.73□□□□□ -1.81
USP28Q96RU2 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC3.73□□□□□ -1.81
USP28Q96RU2 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC3.73□□□□□ -1.81
USP28Q96RU2 AC011979.1-201ENST00000472300 483 ntBASIC3.73□□□□□ -1.81
USP28Q96RU2 RPL31P13-201ENST00000484151 370 ntBASIC3.73□□□□□ -1.81
USP28Q96RU2 AC118282.2-201ENST00000508739 374 ntBASIC3.73□□□□□ -1.81
USP28Q96RU2 AC008837.2-201ENST00000513076 418 ntBASIC3.73□□□□□ -1.81
USP28Q96RU2 APOOP4-201ENST00000513530 597 ntBASIC3.73□□□□□ -1.81
USP28Q96RU2 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC3.73□□□□□ -1.81
USP28Q96RU2 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC3.73□□□□□ -1.81
USP28Q96RU2 AC004217.3-201ENST00000551552 878 ntBASIC3.73□□□□□ -1.81
USP28Q96RU2 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC3.73□□□□□ -1.81
USP28Q96RU2 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC3.73□□□□□ -1.81
USP28Q96RU2 RPL21P12-201ENST00000559810 515 ntBASIC3.73□□□□□ -1.81
USP28Q96RU2 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC3.73□□□□□ -1.81
USP28Q96RU2 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.73□□□□□ -1.81
USP28Q96RU2 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC3.73□□□□□ -1.81
USP28Q96RU2 AL162713.1-201ENST00000604480 262 ntBASIC3.73□□□□□ -1.81
USP28Q96RU2 AC080013.3-201ENST00000606839 578 ntBASIC3.73□□□□□ -1.81
USP28Q96RU2 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC3.73□□□□□ -1.81
USP28Q96RU2 U73479.1-201ENST00000618062 168 ntBASIC3.73□□□□□ -1.81
USP28Q96RU2 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC3.73□□□□□ -1.81
USP28Q96RU2 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.73□□□□□ -1.81
USP28Q96RU2 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
USP28Q96RU2 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.72□□□□□ -1.81
USP28Q96RU2 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.72□□□□□ -1.81
USP28Q96RU2 SGO1P1-201ENST00000603525 1447 ntBASIC3.72□□□□□ -1.81
USP28Q96RU2 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC3.72□□□□□ -1.81
USP28Q96RU2 RNU6-619P-201ENST00000365146 108 ntBASIC3.72□□□□□ -1.81
USP28Q96RU2 AC025750.1-201ENST00000399891 379 ntBASIC3.72□□□□□ -1.81
USP28Q96RU2 MTCO2P31-201ENST00000402702 684 ntBASIC3.72□□□□□ -1.81
USP28Q96RU2 GSTA8P-201ENST00000404253 637 ntBASIC3.72□□□□□ -1.81
USP28Q96RU2 MIR1250-201ENST00000408098 113 ntBASIC3.72□□□□□ -1.81
USP28Q96RU2 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC3.72□□□□□ -1.81
USP28Q96RU2 OR51A3P-201ENST00000413596 924 ntBASIC3.72□□□□□ -1.81
USP28Q96RU2 AC107081.1-201ENST00000414975 361 ntBASIC3.72□□□□□ -1.81
USP28Q96RU2 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC3.72□□□□□ -1.81
USP28Q96RU2 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC3.72□□□□□ -1.81
USP28Q96RU2 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC3.72□□□□□ -1.81
USP28Q96RU2 MTCO1P3-201ENST00000429327 192 ntBASIC3.72□□□□□ -1.81
USP28Q96RU2 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC3.72□□□□□ -1.81
USP28Q96RU2 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC3.72□□□□□ -1.81
USP28Q96RU2 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC3.72□□□□□ -1.81
USP28Q96RU2 RAB11AP1-201ENST00000442978 646 ntBASIC3.72□□□□□ -1.81
USP28Q96RU2 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC3.72□□□□□ -1.81
USP28Q96RU2 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC3.72□□□□□ -1.81
USP28Q96RU2 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC3.72□□□□□ -1.81
USP28Q96RU2 AC008155.2-201ENST00000464337 397 ntBASIC3.72□□□□□ -1.81
USP28Q96RU2 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
USP28Q96RU2 GAPDHP39-201ENST00000481866 979 ntBASIC3.72□□□□□ -1.81
USP28Q96RU2 AC126121.1-201ENST00000482313 553 ntBASIC3.72□□□□□ -1.81
USP28Q96RU2 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC3.72□□□□□ -1.81
USP28Q96RU2 AC011352.3-201ENST00000505162 593 ntBASIC3.72□□□□□ -1.81
USP28Q96RU2 AC034244.1-201ENST00000507687 207 ntBASIC3.72□□□□□ -1.81
USP28Q96RU2 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC3.72□□□□□ -1.81
USP28Q96RU2 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.72□□□□□ -1.81
USP28Q96RU2 HIGD1AP3-201ENST00000515857 278 ntBASIC3.72□□□□□ -1.81
USP28Q96RU2 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC3.72□□□□□ -1.81
USP28Q96RU2 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC3.72□□□□□ -1.81
USP28Q96RU2 AC023050.2-201ENST00000544968 387 ntBASIC3.72□□□□□ -1.81
USP28Q96RU2 MRPS36P5-201ENST00000551909 298 ntBASIC3.72□□□□□ -1.81
USP28Q96RU2 SERPINE4P-201ENST00000554978 281 ntBASIC3.72□□□□□ -1.81
USP28Q96RU2 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC3.72□□□□□ -1.81
USP28Q96RU2 MIR5186-201ENST00000577504 120 ntBASIC3.72□□□□□ -1.81
USP28Q96RU2 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC3.72□□□□□ -1.81
USP28Q96RU2 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC3.72□□□□□ -1.81
USP28Q96RU2 AC021171.1-201ENST00000603137 706 ntBASIC3.72□□□□□ -1.81
USP28Q96RU2 MESTIT1_2.1-201ENST00000616328 235 ntBASIC3.72□□□□□ -1.81
USP28Q96RU2 AC091304.6-201ENST00000619761 202 ntBASIC3.72□□□□□ -1.81
USP28Q96RU2 AP002782.1-201ENST00000623107 614 ntBASIC3.72□□□□□ -1.81
USP28Q96RU2 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC3.72□□□□□ -1.81
USP28Q96RU2 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC3.72□□□□□ -1.81
USP28Q96RU2 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.71□□□□□ -1.81
USP28Q96RU2 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
USP28Q96RU2 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
USP28Q96RU2 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC3.71□□□□□ -1.82
USP28Q96RU2 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
USP28Q96RU2 SNORD113-6-201ENST00000363345 75 ntBASIC3.71□□□□□ -1.82
USP28Q96RU2 Y_RNA.192-201ENST00000363977 102 ntBASIC3.71□□□□□ -1.82
USP28Q96RU2 SNORA51.2-201ENST00000364595 132 ntBASIC3.71□□□□□ -1.82
USP28Q96RU2 MIR554-201ENST00000384874 96 ntBASIC3.71□□□□□ -1.82
USP28Q96RU2 SNORD65.1-201ENST00000390889 71 ntBASIC3.71□□□□□ -1.82
USP28Q96RU2 PTMAP5-201ENST00000393073 333 ntBASIC3.71□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 82.1 ms