Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.34□□□□□ -1.87
VPS35Q96QK1 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.34□□□□□ -1.87
VPS35Q96QK1 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
VPS35Q96QK1 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
VPS35Q96QK1 RNA5SP72-201ENST00000364442 117 ntBASIC3.34□□□□□ -1.87
VPS35Q96QK1 CD2-201ENST00000369477 478 ntTSL 2 BASIC3.34□□□□□ -1.87
VPS35Q96QK1 RNU6-1257P-201ENST00000384625 110 ntBASIC3.34□□□□□ -1.87
VPS35Q96QK1 U3.29-201ENST00000391296 212 ntBASIC3.34□□□□□ -1.87
VPS35Q96QK1 AP000567.1-201ENST00000406413 156 ntBASIC3.34□□□□□ -1.87
VPS35Q96QK1 AC126124.2-201ENST00000413542 321 ntBASIC3.34□□□□□ -1.87
VPS35Q96QK1 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC3.34□□□□□ -1.87
VPS35Q96QK1 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.34□□□□□ -1.87
VPS35Q96QK1 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.34□□□□□ -1.87
VPS35Q96QK1 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.34□□□□□ -1.87
VPS35Q96QK1 RPL23AP82-202ENST00000427528 469 ntBASIC3.34□□□□□ -1.87
VPS35Q96QK1 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.34□□□□□ -1.87
VPS35Q96QK1 MTCO1P3-201ENST00000429327 192 ntBASIC3.34□□□□□ -1.87
VPS35Q96QK1 AL590103.1-201ENST00000434488 307 ntBASIC3.34□□□□□ -1.87
VPS35Q96QK1 RNF148-202ENST00000447240 839 ntTSL 2 BASIC3.34□□□□□ -1.87
VPS35Q96QK1 CENPBD1P1-201ENST00000464061 469 ntBASIC3.34□□□□□ -1.87
VPS35Q96QK1 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC3.34□□□□□ -1.87
VPS35Q96QK1 LINC01995-201ENST00000489016 621 ntTSL 3 BASIC3.34□□□□□ -1.87
VPS35Q96QK1 IL7R-208ENST00000511982 612 ntTSL 2 BASIC3.34□□□□□ -1.87
VPS35Q96QK1 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC3.34□□□□□ -1.87
VPS35Q96QK1 RNA5SP380-201ENST00000517190 98 ntBASIC3.34□□□□□ -1.87
VPS35Q96QK1 AC027309.2-201ENST00000520566 192 ntBASIC3.34□□□□□ -1.87
VPS35Q96QK1 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.34□□□□□ -1.87
VPS35Q96QK1 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.34□□□□□ -1.87
VPS35Q96QK1 AC090502.2-201ENST00000549267 280 ntBASIC3.34□□□□□ -1.87
VPS35Q96QK1 NCAPGP2-201ENST00000557911 754 ntBASIC3.34□□□□□ -1.87
VPS35Q96QK1 AC087481.2-201ENST00000565492 330 ntBASIC3.34□□□□□ -1.87
VPS35Q96QK1 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.34□□□□□ -1.87
VPS35Q96QK1 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC3.34□□□□□ -1.87
VPS35Q96QK1 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC3.34□□□□□ -1.87
VPS35Q96QK1 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC3.34□□□□□ -1.87
VPS35Q96QK1 AC011468.4-201ENST00000603942 409 ntBASIC3.34□□□□□ -1.87
VPS35Q96QK1 ELOCP35-201ENST00000604289 336 ntBASIC3.34□□□□□ -1.87
VPS35Q96QK1 AL159169.3-201ENST00000608871 561 ntBASIC3.34□□□□□ -1.87
VPS35Q96QK1 AC018755.4-201ENST00000619715 454 ntBASIC3.34□□□□□ -1.87
VPS35Q96QK1 RBM12B-AS1-201ENST00000623283 653 ntBASIC3.34□□□□□ -1.87
VPS35Q96QK1 ZNF663P-202ENST00000641770 1131 ntBASIC3.34□□□□□ -1.87
VPS35Q96QK1 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.34□□□□□ -1.88
VPS35Q96QK1 AC244517.1-201ENST00000606030 2086 ntBASIC3.34□□□□□ -1.88
VPS35Q96QK1 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.34□□□□□ -1.88
VPS35Q96QK1 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
VPS35Q96QK1 CR383658.2-201ENST00000547576 1525 ntBASIC3.34□□□□□ -1.88
VPS35Q96QK1 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.34□□□□□ -1.88
VPS35Q96QK1 AC116096.1-201ENST00000566804 2314 ntBASIC3.33□□□□□ -1.88
VPS35Q96QK1 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.33□□□□□ -1.88
VPS35Q96QK1 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
VPS35Q96QK1 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
VPS35Q96QK1 RNA5SP197-201ENST00000363357 119 ntBASIC3.33□□□□□ -1.88
VPS35Q96QK1 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC3.33□□□□□ -1.88
VPS35Q96QK1 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
VPS35Q96QK1 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC3.33□□□□□ -1.88
VPS35Q96QK1 Y_RNA.578-201ENST00000390903 88 ntBASIC3.33□□□□□ -1.88
VPS35Q96QK1 AC016769.3-201ENST00000396562 315 ntBASIC3.33□□□□□ -1.88
VPS35Q96QK1 RNA5SP293-201ENST00000410527 113 ntBASIC3.33□□□□□ -1.88
VPS35Q96QK1 RPS7P13-201ENST00000413955 498 ntBASIC3.33□□□□□ -1.88
VPS35Q96QK1 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC3.33□□□□□ -1.88
VPS35Q96QK1 AC011242.1-201ENST00000433596 1158 ntBASIC3.33□□□□□ -1.88
VPS35Q96QK1 AC009969.1-201ENST00000438726 172 ntBASIC3.33□□□□□ -1.88
VPS35Q96QK1 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC3.33□□□□□ -1.88
VPS35Q96QK1 HMGB1P15-201ENST00000453854 435 ntBASIC3.33□□□□□ -1.88
VPS35Q96QK1 CAB39P1-201ENST00000502277 460 ntBASIC3.33□□□□□ -1.88
VPS35Q96QK1 SUMO2P5-201ENST00000506790 245 ntBASIC3.33□□□□□ -1.88
VPS35Q96QK1 SLC25A15P5-201ENST00000508033 253 ntBASIC3.33□□□□□ -1.88
VPS35Q96QK1 APOOP4-201ENST00000513530 597 ntBASIC3.33□□□□□ -1.88
VPS35Q96QK1 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC3.33□□□□□ -1.88
VPS35Q96QK1 DEFB130C-202ENST00000530001 230 ntBASIC3.33□□□□□ -1.88
VPS35Q96QK1 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.33□□□□□ -1.88
VPS35Q96QK1 AC011602.1-201ENST00000546484 331 ntBASIC3.33□□□□□ -1.88
VPS35Q96QK1 AC011611.1-201ENST00000552179 197 ntBASIC3.33□□□□□ -1.88
VPS35Q96QK1 AC005476.1-201ENST00000554427 397 ntBASIC3.33□□□□□ -1.88
VPS35Q96QK1 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC3.33□□□□□ -1.88
VPS35Q96QK1 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.33□□□□□ -1.88
VPS35Q96QK1 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC3.33□□□□□ -1.88
VPS35Q96QK1 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC3.33□□□□□ -1.88
VPS35Q96QK1 RN7SL339P-201ENST00000580597 296 ntBASIC3.33□□□□□ -1.88
VPS35Q96QK1 MIR4276-201ENST00000584832 70 ntBASIC3.33□□□□□ -1.88
VPS35Q96QK1 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC3.33□□□□□ -1.88
VPS35Q96QK1 BNIP3P31-201ENST00000604515 566 ntBASIC3.33□□□□□ -1.88
VPS35Q96QK1 AC107294.3-201ENST00000609211 526 ntBASIC3.33□□□□□ -1.88
VPS35Q96QK1 AC231759.1-201ENST00000616455 597 ntBASIC3.33□□□□□ -1.88
VPS35Q96QK1 AL356321.1-201ENST00000621360 228 ntBASIC3.33□□□□□ -1.88
VPS35Q96QK1 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC3.33□□□□□ -1.88
VPS35Q96QK1 MFSD8-245ENST00000641743 948 ntBASIC3.33□□□□□ -1.88
VPS35Q96QK1 GDI2P1-201ENST00000429312 1336 ntBASIC3.33□□□□□ -1.88
VPS35Q96QK1 Z99496.1-201ENST00000469424 1477 ntBASIC3.33□□□□□ -1.88
VPS35Q96QK1 Z83843.1-201ENST00000604070 3685 ntBASIC3.33□□□□□ -1.88
VPS35Q96QK1 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
VPS35Q96QK1 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
VPS35Q96QK1 SNORA63.1-201ENST00000362493 131 ntBASIC3.32□□□□□ -1.88
VPS35Q96QK1 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.32□□□□□ -1.88
VPS35Q96QK1 DYNLT3P1-201ENST00000378574 347 ntBASIC3.32□□□□□ -1.88
VPS35Q96QK1 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
VPS35Q96QK1 SNORD65.1-201ENST00000390889 71 ntBASIC3.32□□□□□ -1.88
VPS35Q96QK1 MTCO1P56-201ENST00000401674 224 ntBASIC3.32□□□□□ -1.88
VPS35Q96QK1 RNU6-712P-201ENST00000410558 100 ntBASIC3.32□□□□□ -1.88
VPS35Q96QK1 OR1AA1P-201ENST00000419597 916 ntBASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms